Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B15
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 246 7e-66
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 246 7e-66
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 246 7e-66
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 246 7e-66
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 59 3e-09
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 52 2e-07
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 48 4e-06
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 48 5e-06
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 47 8e-06
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 47 8e-06
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 47 1e-05
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 46 2e-05
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 46 2e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 46 3e-05
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 44 6e-05
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 44 6e-05
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 44 6e-05
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 44 6e-05
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 44 6e-05
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 44 8e-05
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 44 8e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 44 1e-04
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 44 1e-04
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 44 1e-04
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 44 1e-04
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 42 2e-04
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 42 2e-04
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 41 5e-04
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 40 0.001
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 40 0.001
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 40 0.001
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 40 0.001
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 40 0.002
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 40 0.002
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 40 0.002
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 40 0.002
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 40 0.002
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 38 0.004
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 38 0.005
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 38 0.005
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 38 0.005
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 38 0.005
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 38 0.005
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 37 0.009
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 37 0.012
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 37 0.012
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 36 0.027
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 36 0.027
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 36 0.027
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 36 0.027
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 35 0.047
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 35 0.047
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 35 0.047
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 35 0.047
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 34 0.062
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 34 0.082
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 34 0.082
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr... 34 0.082
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 34 0.082
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 34 0.082
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein. 34 0.082
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 33 0.11
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 32 0.25
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 32 0.33
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 31 0.44
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 31 0.44
U42844-4|ABM01868.1| 739|Caenorhabditis elegans Hypothetical pr... 31 0.44
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 31 0.44
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 31 0.44
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 31 0.44
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 31 0.44
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 31 0.58
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 31 0.58
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.77
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 30 1.0
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 30 1.0
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 30 1.0
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 30 1.0
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 30 1.0
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 29 1.8
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 29 3.1
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 28 4.1
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 28 4.1
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 5.4
EF445111-1|ABQ01578.1| 251|Caenorhabditis elegans scramblase 3 ... 28 5.4
AF078785-2|AAC27093.1| 266|Caenorhabditis elegans Hypothetical ... 28 5.4
Z82282-7|CAB05280.2| 584|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 246 bits (603), Expect = 7e-66
Identities = 121/170 (71%), Positives = 139/170 (81%)
Frame = +2
Query: 8 VEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 187
++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK
Sbjct: 201 LDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 260
Query: 188 IRRPHDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQL 367
+RRP DYQP T + +P +ST+V DS +KIFIGGLPNYL EDQVKELL SFG L
Sbjct: 261 VRRPRDYQPSQNTFDMNSRMP---VSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 317
Query: 368 RAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRA 517
+AF+L DS G SKGYAFAEY+D ++TDQAIAGLNGMQLGD++L+VQ A
Sbjct: 318 KAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 246 bits (603), Expect = 7e-66
Identities = 121/170 (71%), Positives = 139/170 (81%)
Frame = +2
Query: 8 VEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 187
++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK
Sbjct: 201 LDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 260
Query: 188 IRRPHDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQL 367
+RRP DYQP T + +P +ST+V DS +KIFIGGLPNYL EDQVKELL SFG L
Sbjct: 261 VRRPRDYQPSQNTFDMNSRMP---VSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 317
Query: 368 RAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRA 517
+AF+L DS G SKGYAFAEY+D ++TDQAIAGLNGMQLGD++L+VQ A
Sbjct: 318 KAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 246 bits (603), Expect = 7e-66
Identities = 121/170 (71%), Positives = 139/170 (81%)
Frame = +2
Query: 8 VEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 187
++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK
Sbjct: 176 LDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 235
Query: 188 IRRPHDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQL 367
+RRP DYQP T + +P +ST+V DS +KIFIGGLPNYL EDQVKELL SFG L
Sbjct: 236 VRRPRDYQPSQNTFDMNSRMP---VSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 292
Query: 368 RAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRA 517
+AF+L DS G SKGYAFAEY+D ++TDQAIAGLNGMQLGD++L+VQ A
Sbjct: 293 KAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 246 bits (603), Expect = 7e-66
Identities = 121/170 (71%), Positives = 139/170 (81%)
Frame = +2
Query: 8 VEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 187
++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK
Sbjct: 179 LDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 238
Query: 188 IRRPHDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQL 367
+RRP DYQP T + +P +ST+V DS +KIFIGGLPNYL EDQVKELL SFG L
Sbjct: 239 VRRPRDYQPSQNTFDMNSRMP---VSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 295
Query: 368 RAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRA 517
+AF+L DS G SKGYAFAEY+D ++TDQAIAGLNGMQLGD++L+VQ A
Sbjct: 296 KAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/95 (30%), Positives = 46/95 (48%)
Frame = +2
Query: 281 SPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQA 460
S +F+G + ++ED ++ + G + + +V D TG KGY F E+ DI + A
Sbjct: 16 SQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVA 75
Query: 461 IAGLNGMQLGDQKLIVQRASIGAKNSTLAMTGAAP 565
I LNG +L + L V A+ G + AP
Sbjct: 76 IRNLNGYELSGRILRVDSAAGGMNMEEFGSSSNAP 110
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
I+IGGL L+E V + +G++ NL++D TG SKG+AF Y D T A+
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 473 NGMQL 487
NG+ L
Sbjct: 100 NGISL 104
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/82 (30%), Positives = 45/82 (54%)
Frame = +2
Query: 272 VPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMT 451
+ +S + I LP + +++V+ L S G++ + LV+D TG S GY F YV
Sbjct: 37 IGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDA 96
Query: 452 DQAIAGLNGMQLGDQKLIVQRA 517
+A++ NG++L ++ + V A
Sbjct: 97 LRAVSSFNGLRLQNKTIKVSYA 118
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++ G+P + +++ + FGQ+ ++ D+ TGLSKG F + D AI L
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 473 NG 478
NG
Sbjct: 190 NG 191
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 251 AGVISTVVPDSP--HKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAF 424
A V +T+ P + +F+ L + ++ + +L FG + +++D T KGYAF
Sbjct: 360 ASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDL-TQQCKGYAF 418
Query: 425 AEYVDISMTDQAIAGLNGMQLGDQKLIV 508
+ + A+ LNG L + L V
Sbjct: 419 VSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G L ++ + +K FG++ +++D T SKGY F + + + AIAG+
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 473 NGMQLGDQKLIVQRASIGAKNS 538
NG +G K V+ KNS
Sbjct: 197 NGKWIG--KRAVRTNWAARKNS 216
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 48.0 bits (109), Expect = 5e-06
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
KIF+GGLP + ++ + E FG + ++ D +T S+GY F D + ++A
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 470 LNGMQLGDQKLIVQRASIGAK---NSTLAMTGAAPVQ 571
N + + +K V A +GAK N LA A VQ
Sbjct: 96 PNPI-IDGRKANVNLAYLGAKPRTNVQLAALAAGQVQ 131
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 47.6 bits (108), Expect = 6e-06
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G L + ++ +++E FG + +++D++T SKGY F Y ++AI +
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 473 NGMQLG 490
NG LG
Sbjct: 84 NGQWLG 89
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G + + L ED++++ SFG++ + K +GYAF ++ + +AI +
Sbjct: 130 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQM 182
Query: 473 NGMQLGDQ 496
N +G Q
Sbjct: 183 NNQDVGGQ 190
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 47.6 bits (108), Expect = 6e-06
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G L + ++ +++E FG + +++D++T SKGY F Y ++AI +
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 473 NGMQLG 490
NG LG
Sbjct: 94 NGQWLG 99
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G + + L ED++++ SFG++ + K +GYAF ++ + +AI +
Sbjct: 140 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQM 192
Query: 473 NGMQLGDQ 496
N +G Q
Sbjct: 193 NNQDVGGQ 200
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 47.6 bits (108), Expect = 6e-06
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G L + ++ +++E FG + +++D++T SKGY F Y ++AI +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 473 NGMQLG 490
NG LG
Sbjct: 197 NGQWLG 202
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
D P +++G L + + ED + L G + ++ D G + YAF E+ D Q
Sbjct: 43 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQ 99
Query: 458 AIAGLNGMQLGDQKLIVQRA 517
A+ +N L D+++ V A
Sbjct: 100 ALQTMNKRLLLDREMKVNWA 119
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G + + L ED++++ SFG++ + K +GYAF ++ + +AI +
Sbjct: 243 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQM 295
Query: 473 NGMQLGDQ 496
N +G Q
Sbjct: 296 NNQDVGGQ 303
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 47.6 bits (108), Expect = 6e-06
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G L + ++ +++E FG + +++D++T SKGY F Y ++AI +
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 473 NGMQLG 490
NG LG
Sbjct: 165 NGQWLG 170
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G + + L ED++++ SFG++ + K +GYAF ++ + +AI +
Sbjct: 211 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQM 263
Query: 473 NGMQLGDQ 496
N +G Q
Sbjct: 264 NNQDVGGQ 271
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 47.2 bits (107), Expect = 8e-06
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Frame = +2
Query: 200 HDYQPMPGTENPAINV-PAGVISTVVPDSPH------KIFIGGLPNYLNEDQVKELLMSF 358
HD + +PG N A+ V PA S P SP K+FIG L +ED+V+ L +F
Sbjct: 91 HDQKTLPGM-NRAMQVKPADTDSR--PASPKDKMDDKKLFIGMLSKQQSEDEVRALFATF 147
Query: 359 GQLRAFNLVKDSSTGLSKGYAFAEY---VDISMTDQAIAGLNGMQLGDQKLIVQRA 517
G+L +++ + G SKG AF +Y +D M A+ G M L+V+ A
Sbjct: 148 GELDEVTVLR-GADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYA 202
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P L E ++ L FG++ F ++KD TG+ KG AF Y
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+FI LP + ++ ++ FG + + + D +T SK + F Y +I + AI +
Sbjct: 431 LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAM 490
Query: 473 NGMQLGDQKLIVQ 511
NG Q+G ++L VQ
Sbjct: 491 NGFQIGMKRLKVQ 503
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 47.2 bits (107), Expect = 8e-06
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Frame = +2
Query: 200 HDYQPMPGTENPAINV-PAGVISTVVPDSPH------KIFIGGLPNYLNEDQVKELLMSF 358
HD + +PG N A+ V PA S P SP K+FIG L +ED+V+ L +F
Sbjct: 91 HDQKTLPGM-NRAMQVKPADTDSR--PASPKDKMDDKKLFIGMLSKQQSEDEVRALFATF 147
Query: 359 GQLRAFNLVKDSSTGLSKGYAFAEY---VDISMTDQAIAGLNGMQLGDQKLIVQRA 517
G+L +++ + G SKG AF +Y +D M A+ G M L+V+ A
Sbjct: 148 GELDEVTVLR-GADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYA 202
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P L E ++ L FG++ F ++KD TG+ KG AF Y
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+FI LP + ++ ++ FG + + + D +T SK + F Y +I + AI +
Sbjct: 431 LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAM 490
Query: 473 NGMQLGDQKLIVQ 511
NG Q+G ++L VQ
Sbjct: 491 NGFQIGMKRLKVQ 503
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G P E+++ S GQ+ +V D TG +G+AF E+ + +A+ +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 473 NGMQLGDQKLIVQRAS 520
NG + + L V A+
Sbjct: 67 NGAEFNGRPLRVNLAN 82
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/66 (28%), Positives = 38/66 (57%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G L + ++ +++E + FG++ +++D++T KGY F Y ++AI +
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 473 NGMQLG 490
NG LG
Sbjct: 194 NGAWLG 199
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Frame = +2
Query: 95 KNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVISTV 271
K FAF+E+ + A + +G G++LK+ +Q M +N P +I V
Sbjct: 143 KTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMM-FQEMRLPQNMPQAQP--IIDMV 199
Query: 272 VPDSPH--KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDIS 445
D+ ++++ + L+E +K + +FG++ L + + +G+ + E+ +++
Sbjct: 200 QKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLT 259
Query: 446 MTDQAIAGLNGMQLGDQKLIV 508
+AIAG+N LG Q L V
Sbjct: 260 SQSEAIAGMNMFDLGGQYLRV 280
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/93 (26%), Positives = 41/93 (44%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
+I++G + + ED ++ FG +++ N+ D +TG K +AF EY A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 470 LNGMQLGDQKLIVQRASIGAKNSTLAMTGAAPV 568
+NG LG + L V M A P+
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPI 195
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Frame = +2
Query: 95 KNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVISTV 271
K FAF+E+ + A + +G G++LK+ +Q M +N P +I V
Sbjct: 143 KTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMM-FQEMRLPQNMPQAQP--IIDMV 199
Query: 272 VPDSPH--KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDIS 445
D+ ++++ + L+E +K + +FG++ L + + +G+ + E+ +++
Sbjct: 200 QKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLT 259
Query: 446 MTDQAIAGLNGMQLGDQKLIV 508
+AIAG+N LG Q L V
Sbjct: 260 SQSEAIAGMNMFDLGGQYLRV 280
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/93 (26%), Positives = 41/93 (44%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
+I++G + + ED ++ FG +++ N+ D +TG K +AF EY A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 470 LNGMQLGDQKLIVQRASIGAKNSTLAMTGAAPV 568
+NG LG + L V M A P+
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPI 195
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Frame = +2
Query: 95 KNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVISTV 271
K FAF+E+ + A + +G G++LK+ +Q M +N P +I V
Sbjct: 143 KTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMM-FQEMRLPQNMPQAQP--IIDMV 199
Query: 272 VPDSPH--KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDIS 445
D+ ++++ + L+E +K + +FG++ L + + +G+ + E+ +++
Sbjct: 200 QKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLT 259
Query: 446 MTDQAIAGLNGMQLGDQKL 502
+AIAG+N LG Q L
Sbjct: 260 SQSEAIAGMNMFDLGGQYL 278
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/93 (26%), Positives = 41/93 (44%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
+I++G + + ED ++ FG +++ N+ D +TG K +AF EY A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 470 LNGMQLGDQKLIVQRASIGAKNSTLAMTGAAPV 568
+NG LG + L V M A P+
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPI 195
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +2
Query: 299 IGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNG 478
+ LP +NED++++L G++ + +D TGL KG+AF + +AIA LN
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 479 MQLGDQKLIVQ 511
+++ L V+
Sbjct: 240 IRMYHMVLKVE 250
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
PD + +FI LP + + FG + + + D T LSK + F Y +
Sbjct: 332 PDGAN-LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSAT 390
Query: 455 QAIAGLNGMQLGDQKLIVQ 511
AI+ +NG Q+G ++L VQ
Sbjct: 391 NAISAMNGFQIGSKRLKVQ 409
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
PD + +FI LP + + FG + + + D T LSK + F Y +
Sbjct: 496 PDGAN-LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSAT 554
Query: 455 QAIAGLNGMQLGDQKLIVQ 511
AI+ +NG Q+G ++L VQ
Sbjct: 555 NAISAMNGFQIGSKRLKVQ 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P NE + L +G + + N+++D ST SKG F +
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 200 HDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFN 379
H+ + + G +P PA + + K+FIG L NE+ ++E+ FG + +
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENR----NERKLFIGQLSKKHNEENLREIFAKFGHIEDCS 172
Query: 380 LVKDSSTGLSKGYAFAEYVDIS 445
+++D G S+G AF + + S
Sbjct: 173 VLRDQD-GKSRGCAFVTFTNRS 193
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
PD + +FI LP + + FG + + + D T LSK + F Y +
Sbjct: 496 PDGAN-LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSAT 554
Query: 455 QAIAGLNGMQLGDQKLIVQ 511
AI+ +NG Q+G ++L VQ
Sbjct: 555 NAISAMNGFQIGSKRLKVQ 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P NE + L +G + + N+++D ST SKG F +
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 200 HDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFN 379
H+ + + G +P PA + + K+FIG L NE+ ++E+ FG + +
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENR----NERKLFIGQLSKKHNEENLREIFAKFGHIEDCS 172
Query: 380 LVKDSSTGLSKGYAFAEYVDIS 445
+++D G S+G AF + + S
Sbjct: 173 VLRDQD-GKSRGCAFVTFTNRS 193
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
PD + +FI LP + + FG + + + D T LSK + F Y +
Sbjct: 425 PDGAN-LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSAT 483
Query: 455 QAIAGLNGMQLGDQKLIVQ 511
AI+ +NG Q+G ++L VQ
Sbjct: 484 NAISAMNGFQIGSKRLKVQ 502
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P NE + L +G + + N+++D ST SKG F +
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 200 HDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFN 379
H+ + + G +P PA + + K+FIG L NE+ ++E+ FG + +
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENR----NERKLFIGQLSKKHNEENLREIFAKFGHIEDCS 172
Query: 380 LVKDSSTGLSKGYAFAEYVDIS 445
+++D G S+G AF + + S
Sbjct: 173 VLRDQD-GKSRGCAFVTFTNRS 193
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
PD + +FI LP + + FG + + + D T LSK + F Y +
Sbjct: 496 PDGAN-LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSAT 554
Query: 455 QAIAGLNGMQLGDQKLIVQ 511
AI+ +NG Q+G ++L VQ
Sbjct: 555 NAISAMNGFQIGSKRLKVQ 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P NE + L +G + + N+++D ST SKG F +
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 200 HDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFN 379
H+ + + G +P PA + + K+FIG L NE+ ++E+ FG + +
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENR----NERKLFIGQLSKKHNEENLREIFAKFGHIEDCS 172
Query: 380 LVKDSSTGLSKGYAFAEYVDIS 445
+++D G S+G AF + + S
Sbjct: 173 VLRDQD-GKSRGCAFVTFTNRS 193
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 44.0 bits (99), Expect = 8e-05
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELL----MSFGQLRAFN--LVKDSSTGLSKGYAFAEYVD 439
D K FIGGLP ++ +L + +L+ F+ LV D +G KG+A+ + +
Sbjct: 3 DEIFKAFIGGLPYDSIATDIETILKHCKFTDEELKKFDIHLVHDRDSGSFKGFAYVTFEN 62
Query: 440 ISMTDQAIAGLNGMQLGDQKLIVQRA 517
+ AI+GLNG G++ L V RA
Sbjct: 63 EQQMNTAISGLNGADFGNRVLKVNRA 88
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQ-LRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
IF+G L ++E + + +FG L+ +++D +G SKG+AF + +D A+
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Query: 470 LNGMQLGDQKLIV----QRASIGAKNSTLA 547
+NG L ++ + V +R S G ++ T A
Sbjct: 162 MNGQFLCNRAITVSYAFKRDSKGERHGTAA 191
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQ-LRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
IF+G L ++E + + +FG L+ +++D +G SKG+AF + +D A+
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 171
Query: 470 LNGMQLGDQKLIV----QRASIGAKNSTLA 547
+NG L ++ + V +R S G ++ T A
Sbjct: 172 MNGQFLCNRAITVSYAFKRDSKGERHGTAA 201
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G +P E+++ + G + +V D TG +G+AF E+ + + +A+ L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 473 NGMQLGDQKLIVQRAS 520
NG+ + L V A+
Sbjct: 68 NGVAFNGRNLRVNYAN 83
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/67 (26%), Positives = 39/67 (58%)
Frame = +2
Query: 263 STVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDI 442
+++ P++ KIF+GGL + +D ++E FG++ +++D +T S+G+ F +
Sbjct: 15 ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK 74
Query: 443 SMTDQAI 463
+ D A+
Sbjct: 75 TEVDAAM 81
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/67 (26%), Positives = 39/67 (58%)
Frame = +2
Query: 263 STVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDI 442
+++ P++ KIF+GGL + +D ++E FG++ +++D +T S+G+ F +
Sbjct: 15 ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK 74
Query: 443 SMTDQAI 463
+ D A+
Sbjct: 75 TEVDAAM 81
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/67 (26%), Positives = 39/67 (58%)
Frame = +2
Query: 263 STVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDI 442
+++ P++ KIF+GGL + +D ++E FG++ +++D +T S+G+ F +
Sbjct: 15 ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK 74
Query: 443 SMTDQAI 463
+ D A+
Sbjct: 75 TEVDAAM 81
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/84 (27%), Positives = 43/84 (51%)
Frame = +2
Query: 212 PMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKD 391
P+ G E +N + S D P K+FIGGL + +++ FG++ +++D
Sbjct: 21 PVDGHEEARLNADSDDGSHGSQD-PGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
Query: 392 SSTGLSKGYAFAEYVDISMTDQAI 463
+T ++G+ F +VD S D+ +
Sbjct: 80 PATKRARGFGFITFVDPSSVDKVL 103
Score = 31.5 bits (68), Expect = 0.44
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +2
Query: 134 TTQAMAFDGINFKGQSL--KIRRPHDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGG 307
T +A F I F S K+ +++ +P + P + +V + K+FIGG
Sbjct: 82 TKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTK-KVFIGG 140
Query: 308 LPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
L + +K+ ++G++ L+ D +T +G+ F + + D+
Sbjct: 141 LSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/104 (28%), Positives = 46/104 (44%)
Frame = +2
Query: 212 PMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKD 391
P P E PA PAG H+I++G +P + ED + L G++ L+ D
Sbjct: 184 PPPDWEGPATG-PAG--------QGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMD 234
Query: 392 SSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRASI 523
+G S+GYAF Y + A +G ++ K + SI
Sbjct: 235 PMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSI 278
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/84 (27%), Positives = 43/84 (51%)
Frame = +2
Query: 212 PMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKD 391
P+ G E +N + S D P K+FIGGL + +++ FG++ +++D
Sbjct: 21 PVDGHEEARLNADSDDGSHGSQD-PGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
Query: 392 SSTGLSKGYAFAEYVDISMTDQAI 463
+T ++G+ F +VD S D+ +
Sbjct: 80 PATKRARGFGFITFVDPSSVDKVL 103
Score = 31.5 bits (68), Expect = 0.44
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +2
Query: 134 TTQAMAFDGINFKGQSL--KIRRPHDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGG 307
T +A F I F S K+ +++ +P + P + +V + K+FIGG
Sbjct: 82 TKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTK-KVFIGG 140
Query: 308 LPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
L + +K+ ++G++ L+ D +T +G+ F + + D+
Sbjct: 141 LSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
P S ++I GL N+D ++E+ +G + + + D +T KGY F ++
Sbjct: 77 PLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAA 136
Query: 455 QAIAGLN--GMQLGDQKL 502
A+ GLN G+Q KL
Sbjct: 137 AAVDGLNTEGVQAQMAKL 154
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +2
Query: 281 SPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQA 460
S +++G P ED + G + +V D TG +G+AF E+ + + +A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 461 IAGLNGMQLGDQKLIVQRA 517
+ NG+ + L V A
Sbjct: 62 VDQFNGVDFNGRALRVNLA 80
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 41.1 bits (92), Expect = 5e-04
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Frame = +2
Query: 200 HDYQPMPGTENPAINVP------AGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFG 361
HD P+ + + +P A P S + G +PN N+D ++E+ +G
Sbjct: 73 HDSTPLSSVSSRRVPLPPTSQHRASSNFNTTPSSTNLYIRGLMPN-TNDDLLREMCSKYG 131
Query: 362 QLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLN--GMQLGDQKL 502
+ + + D +T KGY F ++ A+ GLN G+Q KL
Sbjct: 132 NIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKL 180
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
++F+ LP ED ++ L +G++ +V D TG KG+A E+V A +
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 470 LNG 478
L+G
Sbjct: 340 LDG 342
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
++ + LP+ E Q+++ +GQ+ +L K + G +G+AF ++D A+A
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASL-KYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 470 LNGMQLGDQKLIVQ 511
N +KL V+
Sbjct: 63 SNQTFFNSKKLTVE 76
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+ + ED V + +G+++ +L D TG KGYA EY ++AI
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 473 NGMQLGDQKLIVQRASIGAKNST 541
N L Q + V + K ++
Sbjct: 117 NDTDLLGQNVKVDWCFVKGKKTS 139
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
K+++GGLP+ +++E+ FG++R + + G+AF EY D+ + A+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRDAEDAVRA 58
Query: 470 LNGMQL 487
L+G ++
Sbjct: 59 LDGSRI 64
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
K+++GGLP+ +++E+ FG++R + + G+AF EY D+ + A+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRDAEDAVRA 58
Query: 470 LNGMQL 487
L+G ++
Sbjct: 59 LDGSRI 64
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
K+++GGLP+ +++E+ FG++R + + G+AF EY D+ + A+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRDAEDAVRA 58
Query: 470 LNGMQL 487
L+G ++
Sbjct: 59 LDGSRI 64
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
IFI L ++ V + FG + + + D G SKGY F + AI +
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKV 205
Query: 473 NGMQLGDQKLIV 508
NGM L D+K+ V
Sbjct: 206 NGMLLSDKKVYV 217
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+ +L+++++ + FG++ + ++ D+ G KG+ F + D QA+ L
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 298
Query: 473 NG--MQLGDQKLIVQRASIGAKNS 538
N ++ D KL V RA ++ S
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERS 322
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++ + LN+D +++ SFG + + ++ D + G SKG+ F + A+ +
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDM 403
Query: 473 NGMQLGDQKLIVQRA 517
N +G + L V A
Sbjct: 404 NSKMIGAKPLYVALA 418
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
++IG L ++E + E G + + + +D+++ LS GYA+ + + ++A+ +
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 473 N 475
N
Sbjct: 119 N 119
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
IFI L ++ V + FG + + + D G SKGY F + AI +
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKV 205
Query: 473 NGMQLGDQKLIV 508
NGM L D+K+ V
Sbjct: 206 NGMLLSDKKVYV 217
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+ +L+++++ + FG++ + ++ D+ G KG+ F + D QA+ L
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 298
Query: 473 NG--MQLGDQKLIVQRASIGAKNS 538
N ++ D KL V RA ++ S
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERS 322
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++ + LN+D +++ SFG + + ++ D + G SKG+ F + A+ +
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDM 403
Query: 473 NGMQLGDQKLIVQRA 517
N +G + L V A
Sbjct: 404 NSKMIGAKPLYVALA 418
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
++IG L ++E + E G + + + +D+++ LS GYA+ + + ++A+ +
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 473 N 475
N
Sbjct: 119 N 119
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P NE + L +G + + N+++D ST SKG F +
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 200 HDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFN 379
H+ + + G +P PA + + K+FIG L NE+ ++E+ FG + +
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENR----NERKLFIGQLSKKHNEENLREIFAKFGHIEDCS 172
Query: 380 LVKDSSTGLSKGYAFAEYVDIS 445
+++D G S+G AF + + S
Sbjct: 173 VLRDQD-GKSRGCAFVTFTNRS 193
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P NE + L +G + + N+++D ST SKG F +
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 200 HDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFN 379
H+ + + G +P PA + + K+FIG L NE+ ++E+ FG + +
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENR----NERKLFIGQLSKKHNEENLREIFAKFGHIEDCS 172
Query: 380 LVKDSSTGLSKGYAFAEYVDIS 445
+++D G S+G AF + + S
Sbjct: 173 VLRDQD-GKSRGCAFVTFTNRS 193
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+F+G +P NE + L +G + + N+++D ST SKG F +
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +2
Query: 200 HDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFN 379
H+ + + G +P PA + + K+FIG L NE+ ++E+ FG + +
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENR----NERKLFIGQLSKKHNEENLREIFAKFGHIEDCS 172
Query: 380 LVKDSSTGLSKG 415
+++D G S+G
Sbjct: 173 VLRDQD-GKSRG 183
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/86 (19%), Positives = 47/86 (54%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
++ ++F G L N ++++ + + + + +V++S T SKGY F + D +
Sbjct: 200 ENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVR 259
Query: 458 AIAGLNGMQLGDQKLIVQRASIGAKN 535
A+ ++G +G++ + +++++ +N
Sbjct: 260 AMREMDGKYVGNRPIKLRKSAWKERN 285
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMS-FGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIA 466
IF+G LP + ED + + G + A +V+D TG KG+AF + S A++
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALS 306
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
+I+IG L + ++E ++ +GQ+R L G+ F E+ D + A+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIR--------DVLLKNGFGFVEFDDKRDAEDAVHD 55
Query: 470 LNGMQLGDQKLIV 508
LNG +LG +++I+
Sbjct: 56 LNGKELGGERVIL 68
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
+I+IG L + ++E ++ +GQ+R L G+ F E+ D + A+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIR--------DVLLKNGFGFVEFDDKRDAEDAVHD 55
Query: 470 LNGMQLGDQKLIV 508
LNG +LG +++I+
Sbjct: 56 LNGKELGGERVIL 68
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
+I+IG L + ++E ++ +GQ+R L G+ F E+ D + A+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIR--------DVLLKNGFGFVEFDDKRDAEDAVHD 55
Query: 470 LNGMQLGDQKLIV 508
LNG +LG +++I+
Sbjct: 56 LNGKELGGERVIL 68
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 284 PHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
P++IF+GG P E +++E F ++ +VK S G SKGY F +
Sbjct: 65 PNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVK-SLDGQSKGYGFITF 113
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
IFI L ++ + + FG + + + D G SKGY F + AI +
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKV 180
Query: 473 NGMQLGDQKLIV 508
NGM L +K+ V
Sbjct: 181 NGMLLAGKKVFV 192
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G L +NE + E + G + + + +D++T LS GYA+ + + ++A+ +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 473 N 475
N
Sbjct: 94 N 94
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
IFI L ++ + + FG + + + D G SKGY F + AI +
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKV 117
Query: 473 NGMQLGDQKLIV 508
NGM L +K+ V
Sbjct: 118 NGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
IFI L ++ + + FG + + + D G SKGY F + AI +
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKV 180
Query: 473 NGMQLGDQKLIV 508
NGM L +K+ V
Sbjct: 181 NGMLLAGKKVFV 192
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G L +NE + E + G + + + +D++T LS GYA+ + + ++A+ +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 473 N 475
N
Sbjct: 94 N 94
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 284 PHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
P++IF+GG P E +++E F ++ +VK S G SKGY F +
Sbjct: 66 PNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVK-SLDGQSKGYGFITF 114
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/74 (25%), Positives = 38/74 (51%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
+++IG LPN ++ V+ +G+L S + G+ F ++ D D A+
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKL--------SDVIMKNGFGFVDFQDQRDADDAVHD 54
Query: 470 LNGMQLGDQKLIVQ 511
LNG +L +++I++
Sbjct: 55 LNGKELCGERVILE 68
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 36.7 bits (81), Expect = 0.012
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
KIF+GG+ +N + + +G++ + D + G S+G+AF E+
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQA 460
K+F+GGLP+ +E ++ FG++ D T + +AF + + D+A
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 36.7 bits (81), Expect = 0.012
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
KIF+GG+ +N + + +G++ + D + G S+G+AF E+
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQA 460
K+F+GGLP+ +E ++ FG++ D T + +AF + + D+A
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 35.5 bits (78), Expect = 0.027
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +2
Query: 269 VVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISM 448
+ P +IFI L + D++ E+ G++ + D G SKG +Y
Sbjct: 182 IEPPLCERIFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKE-GKSKGVCVIQYTHPIE 240
Query: 449 TDQAIAGLNGMQLGDQKLIVQ 511
QA++ LNG +L D+ L+V+
Sbjct: 241 AVQAVSMLNGQRLFDRNLVVK 261
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
P K+FIGGL + ++Q+ +G + +++D +T S+G+ F + I +
Sbjct: 45 PPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAE 104
Query: 455 QAI 463
A+
Sbjct: 105 SAM 107
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
P K+FIGGL + ++Q+ +G + +++D +T S+G+ F + I +
Sbjct: 65 PPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAE 124
Query: 455 QAI 463
A+
Sbjct: 125 SAM 127
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
P K+FIGGL + ++Q+ +G + +++D +T S+G+ F + I +
Sbjct: 66 PPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAE 125
Query: 455 QAI 463
A+
Sbjct: 126 SAM 128
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +2
Query: 314 NYLNEDQVKELLMS-FGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLG 490
N + D+ E++ S FG++ +V+D +G S YAF E+ + +QA ++ + +
Sbjct: 249 NPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLID 308
Query: 491 DQKLIVQRASIGAKN 535
D+++ V + ++N
Sbjct: 309 DRRIHVDFSQSVSQN 323
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +2
Query: 314 NYLNEDQVKELLMS-FGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLG 490
N + D+ E++ S FG++ +V+D +G S YAF E+ + +QA ++ + +
Sbjct: 249 NPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLID 308
Query: 491 DQKLIVQRASIGAKN 535
D+++ V + ++N
Sbjct: 309 DRRIHVDFSQSVSQN 323
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +2
Query: 314 NYLNEDQVKELLMS-FGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLG 490
N + D+ E++ S FG++ +V+D +G S YAF E+ + +QA ++ + +
Sbjct: 180 NPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLID 239
Query: 491 DQKLIVQRASIGAKN 535
D+++ V + ++N
Sbjct: 240 DRRIHVDFSQSVSQN 254
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G L Y EDQV EL G +R + D G+ F EY + A+ +
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNI 98
Query: 473 NGMQLGDQ 496
+ ++ D+
Sbjct: 99 SNTRMDDR 106
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 34.3 bits (75), Expect = 0.062
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+ L E+ +KE L FG++ + K +G SKG AF + I G+
Sbjct: 265 VFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGV 324
Query: 473 NGMQLGDQKLIVQRASIGAKNS 538
+ D +L+ +I K +
Sbjct: 325 EDGVIIDNRLVKANLAIPRKEA 346
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 33.9 bits (74), Expect = 0.082
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 12 SSSINRCICPVWRKPPATQFSL 77
++S + C CPVWR PPA Q SL
Sbjct: 2233 ATSRDDCTCPVWRAPPACQHSL 2254
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 33.9 bits (74), Expect = 0.082
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 12 SSSINRCICPVWRKPPATQFSL 77
++S + C CPVWR PPA Q SL
Sbjct: 2233 ATSRDDCTCPVWRAPPACQHSL 2254
>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
protein W02B9.1a protein.
Length = 1223
Score = 33.9 bits (74), Expect = 0.082
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 12 SSSINRCICPVWRKPPATQFSL 77
++S + C CPVWR PPA Q SL
Sbjct: 536 ATSRDDCTCPVWRAPPACQHSL 557
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 33.9 bits (74), Expect = 0.082
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 12 SSSINRCICPVWRKPPATQFSL 77
++S + C CPVWR PPA Q SL
Sbjct: 2233 ATSRDDCTCPVWRAPPACQHSL 2254
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 33.9 bits (74), Expect = 0.082
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 12 SSSINRCICPVWRKPPATQFSL 77
++S + C CPVWR PPA Q SL
Sbjct: 2233 ATSRDDCTCPVWRAPPACQHSL 2254
>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
Length = 1223
Score = 33.9 bits (74), Expect = 0.082
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 12 SSSINRCICPVWRKPPATQFSL 77
++S + C CPVWR PPA Q SL
Sbjct: 536 ATSRDDCTCPVWRAPPACQHSL 557
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+FIG + ++++E GQ+ + KD T K +A+ E+ D S + A+ +
Sbjct: 57 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALV-M 115
Query: 473 NGMQLGDQKLIV 508
NG + ++V
Sbjct: 116 NGSLFRSRPIVV 127
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G L +NE + E + G + + + +D++T LS GYA+ + + ++A+ +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 473 N 475
N
Sbjct: 94 N 94
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++GG + E + + FG + A ++ D +G +G+ F E+ AI +
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 473 NGMQL 487
N +L
Sbjct: 73 NESEL 77
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 245 VPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELL-MSFGQLRAFNLVKDSSTGLSKGYA 421
+PA S V + +++G LP ++ ++V EL M FG++ + + L YA
Sbjct: 149 LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEV-MYARMASGPDALPCAYA 207
Query: 422 FAEYVDISMTDQAIAGLNGMQLGDQKLIVQRASI 523
+ E+ + A+ +G + ++ L +Q + +
Sbjct: 208 YVEFSQQASVCNALQN-DGFEFKERPLKIQHSRV 240
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 245 VPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELL-MSFGQLRAFNLVKDSSTGLSKGYA 421
+PA S V + +++G LP ++ ++V EL M FG++ + + L YA
Sbjct: 149 LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEV-MYARMASGPDALPCAYA 207
Query: 422 FAEYVDISMTDQAIAGLNGMQLGDQKLIVQRASI 523
+ E+ + A+ +G + ++ L +Q + +
Sbjct: 208 YVEFSQQASVCNALQN-DGFEFKERPLKIQHSRV 240
>U42844-4|ABM01868.1| 739|Caenorhabditis elegans Hypothetical
protein C08A9.3 protein.
Length = 739
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -3
Query: 343 FLNLIFIQIVWQTTNKYFVRRIWYYCTYDTSWNIYGR---IFSARHGLIVVRPTYLQALS 173
FL L+ + I+W TN R + Y +SW Y I+S RHG+ + ++ A+S
Sbjct: 451 FLGLVSMGILWTITNNCPHRTTIHLDMYTSSWIFYAAFMWIYSKRHGVRKWQQFFIIAVS 510
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
D +F+GGLP + +++ ++ FG + + D G KG A + S ++
Sbjct: 316 DIHRTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNR 375
Query: 458 AI 463
A+
Sbjct: 376 AL 377
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
D +F+GGLP + +++ ++ FG + + D G KG A + S ++
Sbjct: 316 DIHRTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNR 375
Query: 458 AI 463
A+
Sbjct: 376 AL 377
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
D +F+GGLP + +++ ++ FG + + D G KG A + S ++
Sbjct: 102 DIHRTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNR 161
Query: 458 AI 463
A+
Sbjct: 162 AL 163
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
D +F+GGLP + +++ ++ FG + + D G KG A + S ++
Sbjct: 316 DIHRTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNR 375
Query: 458 AI 463
A+
Sbjct: 376 AL 377
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/94 (20%), Positives = 40/94 (42%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
PD P ++ + +P + +K + FG + ++ + SKG+ F +
Sbjct: 149 PDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAE 206
Query: 455 QAIAGLNGMQLGDQKLIVQRASIGAKNSTLAMTG 556
+A L+G + +K+ V A+ + + TG
Sbjct: 207 RARQELHGSMIEGRKIEVNCATARVHSKKVKPTG 240
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/94 (20%), Positives = 40/94 (42%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
PD P ++ + +P + +K + FG + ++ + SKG+ F +
Sbjct: 149 PDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAE 206
Query: 455 QAIAGLNGMQLGDQKLIVQRASIGAKNSTLAMTG 556
+A L+G + +K+ V A+ + + TG
Sbjct: 207 RARQELHGSMIEGRKIEVNCATARVHSKKVKPTG 240
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.7 bits (66), Expect = 0.77
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 308 LPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAF 424
L +Y E ++++ FG++ +LV D +G S+G+ F
Sbjct: 83 LSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGF 121
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRA------FNLVKDSSTGLSKGYAFAEYVDISMTD 454
+F+ G+ NE + ++ + G + + D +TG KG +VD S
Sbjct: 203 VFVQGISTTANEAYIADVFSTCGDIAKNDRGPRIKIYTDRNTGEPKGECMITFVDASAAQ 262
Query: 455 QAIAGLNG 478
QAI NG
Sbjct: 263 QAITMYNG 270
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/79 (21%), Positives = 43/79 (54%)
Frame = +2
Query: 284 PHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
P K+F+G LP+ ++ +++K++ F ++ ++VK+ YAF +++ D I
Sbjct: 2 PSKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKN--------YAFV-HIEEDDVDPII 52
Query: 464 AGLNGMQLGDQKLIVQRAS 520
L G + + + +++++
Sbjct: 53 TRLTGYTIDGKVVNIKKST 71
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
++F+G LPN + E ++KEL G + L KG+AF + + A
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYL-------SGKGFAFLRLDTRAHAESAKEA 169
Query: 470 LNGMQLGDQKLIVQRASIGA 529
++G + +++ V+ A GA
Sbjct: 170 IDGRIIHGRQVRVRFAVHGA 189
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
++F+G LPN + E ++KEL G + L KG+AF + + A
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYL-------SGKGFAFLRLDTRAHAESAKEA 169
Query: 470 LNGMQLGDQKLIVQRASIGA 529
++G + +++ V+ A GA
Sbjct: 170 IDGRIIHGRQVRVRFAVHGA 189
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/79 (21%), Positives = 43/79 (54%)
Frame = +2
Query: 284 PHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
P K+F+G LP+ ++ +++K++ F ++ ++VK+ YAF +++ D I
Sbjct: 2 PSKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKN--------YAFV-HIEEDDVDPII 52
Query: 464 AGLNGMQLGDQKLIVQRAS 520
L G + + + +++++
Sbjct: 53 TRLTGYTIDGKVVNIKKST 71
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 95 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPG 223
KNFAF+EF+ ++ A+ G F+ + + + +P G
Sbjct: 87 KNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPGMG 129
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 242 NVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 388
N+P + T VP S H IFI GL ++ +++KE + +F+ VK
Sbjct: 36 NLPR-INETQVPQSKHTIFIRGLHGDISTEEIKEYIGEKVGKISFDFVK 83
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 242 NVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 388
N+P + T VP S H IFI GL ++ +++KE + +F+ VK
Sbjct: 36 NLPR-INETQVPQSKHTIFIRGLHGDISTEEIKEYIGEKVGKISFDFVK 83
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 338 KELL---MSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKL 502
KELL FG + + ++ TG KG+A+ + + ++ + A +NG + +Q+L
Sbjct: 46 KELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNGYLMFEQRL 103
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQL 367
++F+G LPN + E ++KEL G +
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDI 142
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQL 367
K+FIGGLP ++E+QV +FG++
Sbjct: 246 KVFIGGLPIDVSEEQVWATFGAFGKV 271
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 281 SPHK-IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDS-STGLSKGYAFAEYVDISMTD 454
SP K + I L + + ++E+ +G ++ +L D + +GY + EY ++ +
Sbjct: 130 SPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAE 189
Query: 455 QAIAGLNGMQLGDQKLIVQ 511
++I ++G Q+ + V+
Sbjct: 190 KSIKHMDGGQIDGMAVHVE 208
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLR 370
K+F+GGLP+ + E + +G+L+
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQ 115
>EF445111-1|ABQ01578.1| 251|Caenorhabditis elegans scramblase 3
protein.
Length = 251
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 346 KFLNLIFIQIVWQTTNKYFVRRIWY 272
+FL I I+ W+T NKY +++I Y
Sbjct: 64 QFLEPIEIRTGWETKNKYAIKKICY 88
>AF078785-2|AAC27093.1| 266|Caenorhabditis elegans Hypothetical
protein C04E12.7 protein.
Length = 266
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 346 KFLNLIFIQIVWQTTNKYFVRRIWY 272
+FL I I+ W+T NKY +++I Y
Sbjct: 64 QFLEPIEIRTGWETKNKYAIKKICY 88
>Z82282-7|CAB05280.2| 584|Caenorhabditis elegans Hypothetical
protein T07G12.10 protein.
Length = 584
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 333 KLRNFSCHLGNCERSIWLKI 392
K+ N CH NC R I KI
Sbjct: 468 KVHNIKCHFDNCNRKIHWKI 487
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,450
Number of Sequences: 27780
Number of extensions: 267573
Number of successful extensions: 927
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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