Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B14
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    31   0.065
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    29   0.26 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   1.1  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    25   4.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   4.3  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   5.6  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   5.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.4  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 31.5 bits (68), Expect = 0.065
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 295 SPQQQRRYKCGLCVKTYMYLHSLRKHMLTH 384
           +P   R YKC LC K +  L    +H+ TH
Sbjct: 19  NPDAPRPYKCPLCTKAFYRLEHQTRHIRTH 48


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 298 PQQQRRYKCGLCVKTYMYLHSLRKHMLTH 384
           PQ+ ++Y C  C + +  L  L++H+ +H
Sbjct: 64  PQKVKQYVCETCTRAFARLEHLKRHIRSH 92


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 310 RRYKCGLCVKTYMYLHSLRKHMLTH 384
           R Y+C LC   ++  H L++H+  H
Sbjct: 471 RPYRCDLCKAGFVRHHDLKRHLRIH 495



 Score = 26.2 bits (55), Expect = 2.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 4   RGYQCQVCGKGYIESSSYKKHMK 72
           R Y+C +C  G++     K+H++
Sbjct: 471 RPYRCDLCKAGFVRHHDLKRHLR 493


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 88  Y*TRAFSCVSYTNSTLCNLSRKPGTGTL 5
           Y  R F+   YT+S +CNLS + G  +L
Sbjct: 79  YSLRVFAKDVYTDSPICNLSARRGLYSL 106


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 310 RRYKCGLCVKTYMYLHSLRKHMLTH 384
           R ++C +C K++   H  R+H   H
Sbjct: 598 RPFQCSICKKSFARQHDKRRHEQLH 622


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 1   ARGYQ-CQVCGKGYIESSSYKKHM 69
           A  YQ C+VC K +    +Y  HM
Sbjct: 66  AEFYQNCEVCNKKFYSEGAYSSHM 89


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 304 QQRRYKCGLCVKTYMYLHSLRKHMLTH 384
           + + Y+C +C K Y  L+ L+ H  TH
Sbjct: 395 ENKPYRCEVCSKRYKNLNGLKYHR-TH 420


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 197 TNSPSNKIKWWLPY 238
           +NS +   KWW+PY
Sbjct: 404 SNSSNRNSKWWVPY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,844
Number of Sequences: 5004
Number of extensions: 19399
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)