Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B11
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 104 7e-23
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 104 7e-23
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 99 3e-21
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.020
06_01_0008 + 141405-142421 29 4.0
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 4.0
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 27 9.3
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 104 bits (249), Expect = 7e-23
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +2
Query: 95 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 262
MSWQ YVD+ LM ++ AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 263 TSGGVTIAGTRYIYLSGTE-RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 439
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 440 KLGDYLITCG 469
+LGDYL+ G
Sbjct: 121 RLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 104 bits (249), Expect = 7e-23
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +2
Query: 95 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 262
MSWQ YVD+ LM ++ AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 263 TSGGVTIAGTRYIYLSGTE-RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 439
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 440 KLGDYLITCG 469
+LGDYL+ G
Sbjct: 121 RLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 99.1 bits (236), Expect = 3e-21
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +2
Query: 95 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 262
MSWQ YVD LM ++ AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 263 TSGGVTIAGTRYIYLSGTERI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 439
G+ + GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120
Query: 440 KLGDYLITCG 469
+LGDYLI G
Sbjct: 121 RLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 188 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 280
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>06_01_0008 + 141405-142421
Length = 338
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 228 FATSSFDISNPSDLAQTF 175
FA+ SFD+ NPSDLA F
Sbjct: 69 FASPSFDLRNPSDLAAFF 86
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 256 TSNKRRCYDSGHAVHLPQRYRTYHTRKARQGRRALHEDTASRRNFSL*RTHSTPAGRIRS 435
TS++RR H +R+R+ +R RR+L D RN R+H AGR R
Sbjct: 906 TSSERR---DRHDDSSRKRHRSL-SRSRSPPRRSLERDREHNRNRDTDRSHGNDAGRERD 961
Query: 436 R 438
R
Sbjct: 962 R 962
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 215 DEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTERIIRAKLGKVG 352
DE+A + GF E ++ GG G Y+ G R + K KVG
Sbjct: 159 DELAAVTGGFAEEKVIGEGGF---GKVYMGALGDGRCVAVKQLKVG 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,612
Number of Sequences: 37544
Number of extensions: 324505
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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