Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B10
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          175   2e-44
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   175   3e-44
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     31   0.86 
06_03_0865 - 25516072-25517007                                         29   3.5  
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254...    27   8.0  
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166...    27   8.0  
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    27   8.0  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  175 bits (426), Expect = 2e-44
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 1/181 (0%)
 Frame = +3

Query: 9   KPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTK 188
           K WR+WH                          ARGH +E +PELPLV+SD  + I KT 
Sbjct: 110 KTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTS 169

Query: 189 QAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGLTRAFRNI 365
           QA+  L+++ A++D  K   S  +R GKGKMRNRR + RKGPLI+Y  +   + +AFRN+
Sbjct: 170 QAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNL 229

Query: 366 PGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKM 545
           PG+++           APGGHLGRF+IWT+SAF +L+ ++G+++ PS +KK F LP+PKM
Sbjct: 230 PGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKM 289

Query: 546 A 548
           A
Sbjct: 290 A 290


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  175 bits (425), Expect = 3e-44
 Identities = 81/181 (44%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +3

Query: 9   KPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTK 188
           K WRRWH                          ARGH +E +PE PLVVSD ++ I KT 
Sbjct: 109 KIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTA 168

Query: 189 QAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGLTRAFRNI 365
           Q++  L++I A++D  K   S  +RAGKGKMRNRR + RKGPLI+Y  +   + +AFRN+
Sbjct: 169 QSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNL 228

Query: 366 PGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKM 545
           PG+++           APGGHLGRF+IWT+ AF +LD ++G + TP+ +KK F LP+PKM
Sbjct: 229 PGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKM 288

Query: 546 A 548
           A
Sbjct: 289 A 289


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +3

Query: 414 APG--GHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQ 536
           APG  G  GR+++   SA + LDP F SW   S+E K F++ +
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEE 711


>06_03_0865 - 25516072-25517007
          Length = 311

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 174 SPGPCPRPLTATRESSQQYAL*PEXXXXXXXXXXXXXRQHVSAVGSRDG 28
           SP P P P  A   S+ QY   PE              +++++VG R G
Sbjct: 233 SPSPPPPPPPAAAASTTQYPFTPEFAAAMQEMIRAEVHKYMASVGVRAG 281


>11_01_0342 +
           2548147-2548275,2548385-2548425,2548521-2548570,
           2548830-2548974,2549854-2549859,2550122-2550245,
           2550422-2550877,2550960-2551013
          Length = 334

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 40  TYGRDVL-PWPPPWQRPGYRPSFRLEGILLRR 132
           TYG  +L P+PPP   P   PS+  EG ++ R
Sbjct: 275 TYGTPLLQPFPPPTPPPSLTPSYN-EGPIISR 305


>05_01_0224 -
           1662818-1663033,1663183-1663266,1663315-1663434,
           1664527-1664655,1664743-1664988
          Length = 264

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 64  WPPPWQRPGYRPSFRLEGILLRR 132
           WPPP   P   P   L+GIL RR
Sbjct: 231 WPPPSFPPSSTPPSDLDGILSRR 253


>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 123 VEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVL 236
           V K+PE  LV + K+Q +   K      R + A+S++L
Sbjct: 56  VTKVPETKLVANPKIQNVRDLKSLRRLSRSLLAFSNLL 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,150
Number of Sequences: 37544
Number of extensions: 285459
Number of successful extensions: 994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)