Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B10
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   179   1e-45
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    29   1.8  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    27   7.2  
Z69637-7|CAO78728.1|  433|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  179 bits (435), Expect = 1e-45
 Identities = 83/181 (45%), Positives = 114/181 (62%), Gaps = 1/181 (0%)
 Frame = +3

Query: 9   KPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTK 188
           K +RRWH                         QARGH+++++ E+PLVVSDKV+   KTK
Sbjct: 105 KVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTK 164

Query: 189 QAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIP 368
           +AV+FLRR   W+D+ KVY S+R RAGKGK+RNR+  Q+ GP++IY +D    RAFRNIP
Sbjct: 165 EAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIP 224

Query: 369 GIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKE-KKNFNLPQPKM 545
           G+++           APGGHLGR IIWT+SAF +LD ++G+    S + KK +++P P M
Sbjct: 225 GVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIM 284

Query: 546 A 548
           A
Sbjct: 285 A 285


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = +3

Query: 111 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 290
           R  + EK+ +L   +S + +EIN  K+ V    RIK   D L++ KS+R    +  +R R
Sbjct: 353 RSDVEEKLDKLKDDISSREREINAQKEEV---NRIK---DSLRLEKSKRNELEEEVLRQR 406

Query: 291 RRVQRK 308
           R  Q +
Sbjct: 407 RCAQEE 412


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 365 PWHRDAQREQAEPPEAGTRRPSRQ 436
           PW+        EPP  G+RRPS+Q
Sbjct: 802 PWYSRDPIVNPEPPSVGSRRPSKQ 825


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -1

Query: 532  GRLKFFFSFDGVFHEPNSGSSLSKADLVQMMNLPRWPPGASFRRFSLFTLSISMPGMLRN 353
            G++ FF +         +   L+K+     +++P  P G SFR   ++  S S+  ML  
Sbjct: 1268 GKINFFQTSQSFLGMGQAQLKLTKSQPAPTVSVPTTPSGTSFRPRLVWINSKSLTLMLPE 1327

Query: 352  ARVRPLSL 329
             R +  SL
Sbjct: 1328 GREQRFSL 1335


>Z69637-7|CAO78728.1|  433|Caenorhabditis elegans Hypothetical
           protein F35G2.1b protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 472 SLSKADLVQMMNLPRWPPGASFRR 401
           +LS + LVQM+N+  +P  A FRR
Sbjct: 66  ALSNSPLVQMLNIRNFPTVALFRR 89


>Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical
           protein F35G2.1a protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 472 SLSKADLVQMMNLPRWPPGASFRR 401
           +LS + LVQM+N+  +P  A FRR
Sbjct: 234 ALSNSPLVQMLNIRNFPTVALFRR 257


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 110 SLNEGRYPGRCHGGGHGSTSLP*VHATVPAPPRLPR 3
           ++ + RY   C+  GH S SLP +H      P  P+
Sbjct: 249 NIGQNRY-NNCYDNGHSSRSLPSIHQHQQMIPNHPQ 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,116,149
Number of Sequences: 27780
Number of extensions: 210525
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)