Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B08
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   1.8  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   2.4  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   9.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   9.5  

>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 197 TVYSTPGSETSAYAEKVKSSPGENEQRYCDS*IRMERASQRFTS 328
           T + T  S T+   E   +SP +NEQ   D+ I  +R  QR+T+
Sbjct: 425 TPFPTSSSSTNGTLEPNANSPKKNEQ---DAWIAKKRRQQRYTT 465


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 405 QTVPKDQTSIEIKDLQPNSMYFLQVQTISQFGVGKLRSEKASIFYN 542
           QT   +  SIE+++++  S+YF   Q  +   V +  SE+  +F+N
Sbjct: 366 QTYSLNMLSIEMENIE-GSLYFGNAQLSNLICVNQYLSEQRPVFFN 410


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 303 KEPHSDLPVVRYKVFWSRRV 362
           ++P SDL +V Y+ +W  RV
Sbjct: 274 EKPLSDLGLVTYRSYWKMRV 293


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 CVWYKRIFFTKPTVYSTPGSETSAYAEK 244
           C W  RI+  K T  +  G+ TSA  E+
Sbjct: 337 CSWIGRIWSIKLTYMTLSGASTSAVCEE 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,107
Number of Sequences: 5004
Number of extensions: 48479
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)