Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B08
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    30   1.4  
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    28   5.5  
07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913     27   7.3  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    27   9.7  

>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 369  LGGELDSVLVNHQTVPKD-QTSIEIKDLQPNSM-YFLQVQTISQFG 500
            LG  +  V+  H+ +  +   S E+KDLQ NS+ YF+Q +T S+ G
Sbjct: 1828 LGNGIGDVISVHEKIEDNIHESAELKDLQDNSLVYFIQDET-SELG 1872


>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 149 SCCKCVWYKRIFFTKPTVYSTPGSETSAYAEKVKSSP 259
           SC   +  +R F+   +V    G  +SAY++K  SSP
Sbjct: 824 SCLDTMTVERAFYNPASVNEIEGVGSSAYSKKYHSSP 860


>07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913
          Length = 213

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 164 VWYKRIFFTKPTVYSTP---GSETSAYAEKVKSSPGENEQR 277
           VW++R  F +  V +     GSE+++ AEK K +PG+   R
Sbjct: 39  VWFRRHCFFQSLVRARDQKRGSESNSGAEKEKLTPGKKRTR 79


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 414 PKDQTSIEIKDLQPNSMYFLQVQTISQFG 500
           PKDQ  I + +LQP + Y  ++ + +++G
Sbjct: 584 PKDQRRILVSNLQPCTEYAFRIISFTEYG 612


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,913,252
Number of Sequences: 37544
Number of extensions: 298620
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)