Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B07
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.066
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.27 
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   4.4  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    25   5.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   7.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.6  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   7.6  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.066
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 225 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 395
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 282 LIKLIYVPVTICLRQPMLRLLNLHATAGHESLLTYSRGNCSNIMRIV 142
           L+ L Y     C+    LR L  H T GH  LL +S     N + IV
Sbjct: 16  LVILFYAKNRFCISIDHLRPLKSHRTHGHYCLLNFSLRENKNYLIIV 62


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 336 LDAELGSF*TFLENKVNILIKLIYVPVTIC 247
           +D +LG    F+ ++ NI+I + Y+P  +C
Sbjct: 87  MDKDLG----FVGDQYNIMISIFYIPFVLC 112


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 240 QPMLRLLNLHATAGHESLLTYSRGNCSNIMRIVRPTP*WRRLWEPYPKLCTL 85
           QP+L +L   ++A   S+L  +    SN+ R   P P W  +    P L  L
Sbjct: 207 QPLLNILQ--SSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKL 256


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 253 NLPSAANVTSTKSPRDSRP*KPADI 179
           ++P+A   +ST S RD  P  P D+
Sbjct: 349 SIPAAEPASSTTSARDQTPSTPKDV 373


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 249 RLLQAHKLVLSVCSPYFQEMFKMNPTQHPIV 341
           R+ ++ K + +VCS  +Q +   +PT  P V
Sbjct: 156 RIAESGKCLCTVCSCLYQGIISHSPTFRPFV 186


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -1

Query: 330 AELGSF*T-FLENKVNILIK-LIYVPVTICLRQPMLRLLNLHATAGHESLLTYSRGNCSN 157
           AEL S  T F    ++ ++K LI++P+    +    RLLNL     HE LL+  + N ++
Sbjct: 734 AELCSSLTRFTPKNIDFVLKSLIHIPIHSITKNQRTRLLNLLII--HEKLLS-DKDNSAH 790

Query: 156 I 154
           I
Sbjct: 791 I 791


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +3

Query: 150 SLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLV 275
           +L +NN H+N+ +G H  L+  +L + +   E  ++Q ++ +
Sbjct: 363 NLDYNNCHSNVWSGEHS-LTLSNLAEKSNLKEAEIIQGNRTI 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,905
Number of Sequences: 5004
Number of extensions: 38455
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)