Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B06
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.34 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    29   0.34 
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   4.2  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   4.2  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   7.3  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    24   9.7  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -3

Query: 374 NNSAYSKSLTSLVDLSRSSFTLTGSQSRK---ATGGAPSTRLKTRPER*SLKNELGFSSM 204
           N S++S+  T + DL   + ++T  +S     + GG P  R + +     +++E+ FSS 
Sbjct: 94  NGSSFSRHRT-IRDLDDEAESVTSEESESDDSSYGGTPKKRSRQKKSNTYVQDEIRFSSR 152

Query: 203 SLPSVNF 183
           +   VN+
Sbjct: 153 NSKGVNY 159


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -3

Query: 365 AYSKSLTSLVDLSRSSFTLTGSQSRKATGG 276
           AYS S T+LV +SR SFTLTG  +    GG
Sbjct: 287 AYSYSDTNLV-VSRDSFTLTGDDNLFPEGG 315


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 452 AMSHCFHAFVP 420
           A+SHC HAFVP
Sbjct: 220 AISHCSHAFVP 230


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 169  ILQRKKLTEGKDIDENPSSFFKLQRSGRVLRRVDGAPPVAF--RDWEP 306
            I QR+ LTE  + D+    F    RSG +   + GA  V F   DW P
Sbjct: 1043 IEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNP 1090


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 335 DLSRSSFTLTGSQSRKATGGAPSTRLKTRPER*SLKNELGFSSMSLPSVN 186
           D   SSF   GS++  +TG A  T L T     SLK    F +M   +V+
Sbjct: 357 DRDSSSFYGLGSKNFSSTGEAEGTGLSTPIIAESLKENDEFFAMEKENVD 406


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  WTVATVLQLFKCSSALILMLRFKEVPVCHPPIAILQR 180
           WTV     LF   + + + L   +  V H P++I++R
Sbjct: 121 WTVFVSAVLFNFLNGMSIGLYLVQASVQHHPVSIIRR 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,048
Number of Sequences: 5004
Number of extensions: 35206
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)