Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B06
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    34   0.063
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624...    30   0.78 
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497...    30   0.78 
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565...    29   1.4  
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280...    29   1.4  

>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 33.9 bits (74), Expect = 0.063
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 358 LYAELLHILKPLVHLSALRIFGTKAWKQW 444
           L  E++HI +PL+++  ++ FG K+W  W
Sbjct: 256 LLGEVVHIFRPLLYVLLIKKFGIKSWTPW 284


>10_08_0095 +
           14760292-14760624,14760689-14761000,14761768-14762489,
           14762905-14763187,14763419-14763650,14763736-14764187
          Length = 777

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 310 KVNDDRLRSTSEVKDLLYAELLHILKPLVHLSALRIFGTKAWKQWLIALC 459
           KV +DR RS +    L+ A+  +    L  + AL +F    W+QW I  C
Sbjct: 334 KVEEDRARSAAACIQLVVADGHNPWSDLFFM-ALDVFERAYWRQWFIDYC 382


>03_05_0361 -
           23448459-23448910,23448990-23449406,23449542-23449735,
           23449854-23449902,23450155-23450539,23450578-23450874,
           23451650-23451961
          Length = 701

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = +1

Query: 241 RSGRVLRRVDGAPPVAFRDWEPVKVNDDRLRSTSEVKDLLYAELLHILKPLVHLSALRIF 420
           R  R+ RRV+   P    +    KV +DR RS +    L+ A+  +    L  + AL +F
Sbjct: 190 RGDRLQRRVEVTQPSM--ESRSRKVEEDRARSAAACIQLVVADGHNPGSDLFFM-ALDVF 246

Query: 421 GTKAWKQWLIALC 459
               W QW I  C
Sbjct: 247 ERAYWGQWFIDYC 259


>11_01_0687 -
           5651002-5651453,5651535-5651951,5652621-5653338,
           5654106-5654417,5654482-5654814
          Length = 743

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 310 KVNDDRLRSTSEVKDLLYAELLHILKPLVHLSALRIFGTKAWKQWLIALC 459
           KV +DR RS +    L+ A+  +    L  + AL +F    W+QW I  C
Sbjct: 334 KVEEDRARSAAACIQLVVADGHNPGSDLFFM-ALDVFERAYWRQWFIDYC 382


>04_01_0222 -
           2805329-2805780,2805866-2806611,2806730-2806778,
           2807031-2807748,2808513-2808824
          Length = 758

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 310 KVNDDRLRSTSEVKDLLYAELLHILKPLVHLSALRIFGTKAWKQWLIALC 459
           KV +DR RS +    L+ A+  +    L  + AL +F    W+QW I  C
Sbjct: 223 KVEEDRARSAAACIQLVVADGHNPGSDLFFM-ALDVFERAYWRQWFIDYC 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,864,349
Number of Sequences: 37544
Number of extensions: 217062
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)