Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B06
         (460 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000467-1|AAH00467.1|  346|Homo sapiens peroxisomal biogenesis ...    76   5e-14
BC004356-1|AAH04356.1|  336|Homo sapiens peroxisomal biogenesis ...    76   7e-14
AF118240-1|AAD22466.1|  336|Homo sapiens peroxisomal biogenesis ...    76   7e-14
AB016531-1|BAA88826.1|  336|Homo sapiens PEX16 protein.                76   7e-14

>BC000467-1|AAH00467.1|  346|Homo sapiens peroxisomal biogenesis
           factor 16 protein.
          Length = 346

 Score = 76.2 bits (179), Expect = 5e-14
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
 Frame = +1

Query: 19  EVLIELIVKTKYGNRGKWTVATVLQLFKCSSALILMLRFKEVPVCHPPIAILQRKKLTEG 198
           EV +E+     +G  G+W V  ++QL K    ++L+L FK      PPI  L R+   + 
Sbjct: 93  EVFMEMGAAKVWGELGRWLVIALIQLAKAVLRILLLLWFKAGLQTSPPIVPLDRETQAQP 152

Query: 199 KDIDENPSSF---FKLQRSGRVLRRVDGAPPVAFRDWEPVKVNDDR-------LRSTSEV 348
            D D +P +    +  +RS RV+R +   P +  R W   +  + R       L +T   
Sbjct: 153 PDGDHSPGNHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTP 212

Query: 349 KDL--LYAELLHILKPLVHLSALRIFGTKAWKQWLIA 453
             L    AE L+I +PL+HL +L ++G ++WK WL+A
Sbjct: 213 LGLQETIAEFLYIARPLLHLLSLGLWGQRSWKPWLLA 249


>BC004356-1|AAH04356.1|  336|Homo sapiens peroxisomal biogenesis
           factor 16 protein.
          Length = 336

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
 Frame = +1

Query: 19  EVLIELIVKTKYGNRGKWTVATVLQLFKCSSALILMLRFKEVPVCHPPIAILQRKKLTEG 198
           EV +E+     +G  G+W V  ++QL K    ++L+L FK      PPI  L R+   + 
Sbjct: 93  EVFMEMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLLWFKAGLQTSPPIVPLDRETQAQP 152

Query: 199 KDIDENPSSF---FKLQRSGRVLRRVDGAPPVAFRDWEPVKVNDDR-------LRSTSEV 348
            D D +P +    +  +RS RV+R +   P +  R W   +  + R       L +T   
Sbjct: 153 PDGDHSPGNHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTP 212

Query: 349 KDL--LYAELLHILKPLVHLSALRIFGTKAWKQWLIA 453
             L    AE L+I +PL+HL +L ++G ++WK WL+A
Sbjct: 213 LGLQETIAEFLYIARPLLHLLSLGLWGQRSWKPWLLA 249


>AF118240-1|AAD22466.1|  336|Homo sapiens peroxisomal biogenesis
           factor 16 protein.
          Length = 336

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
 Frame = +1

Query: 19  EVLIELIVKTKYGNRGKWTVATVLQLFKCSSALILMLRFKEVPVCHPPIAILQRKKLTEG 198
           EV +E+     +G  G+W V  ++QL K    ++L+L FK      PPI  L R+   + 
Sbjct: 93  EVFMEMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLLWFKAGLQTSPPIVPLDRETQAQP 152

Query: 199 KDIDENPSSF---FKLQRSGRVLRRVDGAPPVAFRDWEPVKVNDDR-------LRSTSEV 348
            D D +P +    +  +RS RV+R +   P +  R W   +  + R       L +T   
Sbjct: 153 PDGDHSPGNHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTP 212

Query: 349 KDL--LYAELLHILKPLVHLSALRIFGTKAWKQWLIA 453
             L    AE L+I +PL+HL +L ++G ++WK WL+A
Sbjct: 213 LGLQETIAEFLYIARPLLHLLSLGLWGQRSWKPWLLA 249


>AB016531-1|BAA88826.1|  336|Homo sapiens PEX16 protein.
          Length = 336

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
 Frame = +1

Query: 19  EVLIELIVKTKYGNRGKWTVATVLQLFKCSSALILMLRFKEVPVCHPPIAILQRKKLTEG 198
           EV +E+     +G  G+W V  ++QL K    ++L+L FK      PPI  L R+   + 
Sbjct: 93  EVFMEMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLLWFKAGLQTSPPIVPLDRETQAQP 152

Query: 199 KDIDENPSSF---FKLQRSGRVLRRVDGAPPVAFRDWEPVKVNDDR-------LRSTSEV 348
            D D +P +    +  +RS RV+R +   P +  R W   +  + R       L +T   
Sbjct: 153 PDGDHSPGNHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTP 212

Query: 349 KDL--LYAELLHILKPLVHLSALRIFGTKAWKQWLIA 453
             L    AE L+I +PL+HL +L ++G ++WK WL+A
Sbjct: 213 LGLQETIAEFLYIARPLLHLLSLGLWGQRSWKPWLLA 249


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,411,482
Number of Sequences: 237096
Number of extensions: 1176638
Number of successful extensions: 2171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2167
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)