Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B06
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-7|ABQ13064.1|  205|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U88169-6|AAB42236.2|  216|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U20861-2|ABD63243.1|  254|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U20861-1|AAA62293.1|  302|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical ...    27   6.6  
AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical...    27   6.6  

>U88169-7|ABQ13064.1|  205|Caenorhabditis elegans Hypothetical
           protein T03F1.8b protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 157 PPIAILQRKKLTEGKDIDENPSSFFKLQRSGRVLRRVDGAPPVAFRDWEPVKVNDDRLRS 336
           P I +L+ +    G + +E+ S   +LQ +   L  ++  P +    ++ V VNDD  R+
Sbjct: 134 PSIKLLEERLRARGTETEESLSK--RLQHASEDLVEIEKNPTL----FDKVIVNDDLERA 187

Query: 337 TSEVKDLLYAEL 372
             E  DLL  +L
Sbjct: 188 YKEFVDLLRDDL 199


>U88169-6|AAB42236.2|  216|Caenorhabditis elegans Hypothetical
           protein T03F1.8a protein.
          Length = 216

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 157 PPIAILQRKKLTEGKDIDENPSSFFKLQRSGRVLRRVDGAPPVAFRDWEPVKVNDDRLRS 336
           P I +L+ +    G + +E+ S   +LQ +   L  ++  P +    ++ V VNDD  R+
Sbjct: 145 PSIKLLEERLRARGTETEESLSK--RLQHASEDLVEIEKNPTL----FDKVIVNDDLERA 198

Query: 337 TSEVKDLLYAEL 372
             E  DLL  +L
Sbjct: 199 YKEFVDLLRDDL 210


>U20861-2|ABD63243.1|  254|Caenorhabditis elegans Hypothetical
           protein C28H8.5b protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 229 FKLQRSGRVLRRVDGAPPVAFRDWEPVKVN--DDRLRSTSEVKDLLYAELLHILKPL 393
           F+LQR GR+    D A  + FR+W  +  N  + RL  T+ +   L      I K +
Sbjct: 196 FRLQRIGRISFSHDSAVRIMFREWTLLDENRLEARLLMTTTITRRLMEHTAVIYKKI 252


>U20861-1|AAA62293.1|  302|Caenorhabditis elegans Hypothetical
           protein C28H8.5a protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 229 FKLQRSGRVLRRVDGAPPVAFRDWEPVKVN--DDRLRSTSEVKDLLYAELLHILKPL 393
           F+LQR GR+    D A  + FR+W  +  N  + RL  T+ +   L      I K +
Sbjct: 244 FRLQRIGRISFSHDSAVRIMFREWTLLDENRLEARLLMTTTITRRLMEHTAVIYKKI 300


>AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical
           protein ZK488.6 protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 359 SKSLTSLVDLSRSSFTLTGSQSRKATGGAPSTRLKTRPE-R*SLKNELGFSSMSLPSVNF 183
           SKSL  +  L+  +F +  S+ + +TGG   T++  RPE    +  E+  +S +L S + 
Sbjct: 26  SKSLLIIFALTNVAFLICFSKIKFSTGGTEVTKI-ARPEVIVKVPTEISTTSTALSSTSQ 84

Query: 182 FL 177
           F+
Sbjct: 85  FI 86


>AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical
           protein Y18H1A.15 protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 240 LKFEKRTWIFIYVFTFS*LFPLQYS 166
           +KFE R+W FI V   +  FP +YS
Sbjct: 347 MKFEFRSWYFILVTLNTYFFPEKYS 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,500,932
Number of Sequences: 27780
Number of extensions: 202103
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)