Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B06
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 133 FKEVPVCHPPIAILQRKKLTE 195
           FKE    +PP +IL RK +++
Sbjct: 360 FKETLRMYPPASILMRKAISD 380


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 81  HSSTIIQVFLSINTD 125
           HSS ++++FLS+  D
Sbjct: 129 HSSKLVELFLSLGAD 143


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 393 GSSFCIENIWHKGMEAVA 446
           G+  C++  W K +EA+A
Sbjct: 328 GNPICVQIPWDKNVEALA 345


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 354 FTVCRIIAYPETIGSSFCIENIWHK 428
           F +C +  +   + S FC + IW +
Sbjct: 344 FIICWLPFFVVNLWSGFCSQCIWQE 368


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 193 EGKDIDENPSSFFKLQRSGRVLRRVDGAPPVA 288
           + K   E P S+ +L  +  + R     PPVA
Sbjct: 531 DSKSSTETPPSYNQLNYNENIERFFKSKPPVA 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,876
Number of Sequences: 438
Number of extensions: 2445
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)