Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B05
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 277 6e-76
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 149 3e-37
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 149 3e-37
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 148 3e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 148 3e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 93 2e-20
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 45 5e-06
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 42 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 6e-05
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 0.99
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.3
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 25 5.3
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 5.3
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 7.0
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 9.3
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 277 bits (679), Expect = 6e-76
Identities = 135/143 (94%), Positives = 140/143 (97%)
Frame = +3
Query: 18 TREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
T EVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
Query: 198 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLS 377
RGGMQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLS
Sbjct: 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 378 DYNIQKESTLHLVLRLRGGMQIF 446
DYNIQKESTLHLVLRLRGGMQIF
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIF 156
Score = 277 bits (679), Expect = 6e-76
Identities = 135/143 (94%), Positives = 140/143 (97%)
Frame = +3
Query: 18 TREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
T EVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 90 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 149
Query: 198 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLS 377
RGGMQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLS
Sbjct: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 378 DYNIQKESTLHLVLRLRGGMQIF 446
DYNIQKESTLHLVLRLRGGMQIF
Sbjct: 210 DYNIQKESTLHLVLRLRGGMQIF 232
Score = 277 bits (679), Expect = 6e-76
Identities = 135/143 (94%), Positives = 140/143 (97%)
Frame = +3
Query: 18 TREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
T EVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 166 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 225
Query: 198 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLS 377
RGGMQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLS
Sbjct: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 378 DYNIQKESTLHLVLRLRGGMQIF 446
DYNIQKESTLHLVLRLRGGMQIF
Sbjct: 286 DYNIQKESTLHLVLRLRGGMQIF 308
Score = 270 bits (661), Expect = 9e-74
Identities = 131/140 (93%), Positives = 137/140 (97%)
Frame = +3
Query: 18 TREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
T EVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 242 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 301
Query: 198 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLS 377
RGGMQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLS
Sbjct: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 378 DYNIQKESTLHLVLRLRGGM 437
DYNIQKESTLHLVLRLRGG+
Sbjct: 362 DYNIQKESTLHLVLRLRGGL 381
Score = 156 bits (379), Expect = 1e-39
Identities = 76/80 (95%), Positives = 78/80 (97%)
Frame = +3
Query: 207 MQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 386
MQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 387 IQKESTLHLVLRLRGGMQIF 446
IQKESTLHLVLRLRGGMQIF
Sbjct: 61 IQKESTLHLVLRLRGGMQIF 80
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 149 bits (360), Expect = 3e-37
Identities = 72/77 (93%), Positives = 75/77 (97%)
Frame = +3
Query: 207 MQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 386
MQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 387 IQKESTLHLVLRLRGGM 437
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 125 bits (302), Expect = 3e-30
Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Frame = +3
Query: 18 TREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
T EVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
Query: 198 RGG-MQIFVKTLTGK 239
RGG ++ +K L K
Sbjct: 74 RGGIIEPSLKALASK 88
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 149 bits (360), Expect = 3e-37
Identities = 72/77 (93%), Positives = 75/77 (97%)
Frame = +3
Query: 207 MQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 386
MQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 387 IQKESTLHLVLRLRGGM 437
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 125 bits (302), Expect = 3e-30
Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Frame = +3
Query: 18 TREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
T EVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
Query: 198 RGG-MQIFVKTLTGK 239
RGG ++ +K L K
Sbjct: 74 RGGIIEPSLKALASK 88
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 148 bits (359), Expect = 3e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +3
Query: 207 MQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 386
MQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 387 IQKESTLHLVLRLRGG 434
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 124 bits (300), Expect = 5e-30
Identities = 59/63 (93%), Positives = 62/63 (98%)
Frame = +3
Query: 18 TREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
T EVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
Query: 198 RGG 206
RGG
Sbjct: 74 RGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 148 bits (359), Expect = 3e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +3
Query: 207 MQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 386
MQIFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 387 IQKESTLHLVLRLRGG 434
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 124 bits (300), Expect = 5e-30
Identities = 59/63 (93%), Positives = 62/63 (98%)
Frame = +3
Query: 18 TREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
T EVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
Query: 198 RGG 206
RGG
Sbjct: 74 RGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 93.1 bits (221), Expect = 2e-20
Identities = 41/76 (53%), Positives = 56/76 (73%)
Frame = +3
Query: 207 MQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 386
M I VKTLTGK I L+++P+D + +K +++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 387 IQKESTLHLVLRLRGG 434
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 74.1 bits (174), Expect = 9e-15
Identities = 29/61 (47%), Positives = 45/61 (73%)
Frame = +3
Query: 24 EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 203
+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLVL LRG
Sbjct: 16 DIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRG 75
Query: 204 G 206
G
Sbjct: 76 G 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 45.2 bits (102), Expect = 5e-06
Identities = 19/55 (34%), Positives = 36/55 (65%)
Frame = +3
Query: 6 QEFGTREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 170
Q+F +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 11 QKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 42.3 bits (95), Expect = 3e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 234 GKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 407
GK LE+EP++T +K + +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 35.9 bits (79), Expect = 0.003
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 24 EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 179
E+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 16 EIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 6e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 207 MQIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 386
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 387 IQKESTLHLVLRL 425
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 27 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 197
V++ ++ +K I I ++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 0.99
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 210 QIFVKTLTGKTITLEVEPSDTIENVKAIIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 383
+I V T+ K +V + T+ +K +I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 384 NIQKESTLHLVL 419
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
Score = 26.6 bits (56), Expect = 1.7
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 6 QEFGTREVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--YNIQKESTL 179
Q+ G +V + T+ +K I P D+ +LI AG+ L + L + ++ T
Sbjct: 13 QKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILHDATDLVTF 72
Query: 180 HLVLRLRGGMQIFVKTLTGKTI 245
HLV+ + + + T ++
Sbjct: 73 HLVIAVFNSTSTTLPSATSSSV 94
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 325 SNVLSSPANNSKTGALFPITTFKKN 399
S ++S+PA+NS TG+L ++F N
Sbjct: 615 SEIVSTPASNSNTGSLNGTSSFNVN 639
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 5.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 275 NCVRRLNFECDSFAS*SFDEDLHTT 201
NC +++NFE + F FD L T
Sbjct: 38 NCYKKVNFEIEHFKGADFDCQLKPT 62
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 5.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 443 NLHTTAQT*DQMKCGFFLNVVIGK 372
N H AQ ++++C FL ++IGK
Sbjct: 751 NTHAYAQDVERLRCYEFLGMLIGK 774
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 132 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGKTITL 251
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 360 DGRTLSDYNIQKESTLHLVLRLR 428
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 48 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 167
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,450
Number of Sequences: 5004
Number of extensions: 28737
Number of successful extensions: 104
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -