Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B04
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 29 1.1
08_02_0041 + 11531010-11531366,11531409-11531657 28 1.8
06_03_1172 - 28147957-28148274,28149362-28149877 27 3.2
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 27 4.2
06_01_1187 + 10216017-10216022,10216327-10216367,10217800-102178... 27 4.2
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912 27 4.2
06_03_1291 + 29062073-29062477 27 5.6
12_02_1031 + 25537495-25537552,25538774-25538836,25538966-255392... 26 7.4
07_03_1102 - 23981362-23982219 26 7.4
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 26 7.4
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 26 7.4
01_02_0016 - 10199085-10199170,10200649-10201456 26 7.4
12_01_0416 - 3294386-3294513,3294583-3294743,3295058-3295151,329... 26 9.8
08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065 26 9.8
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 26 9.8
06_03_1221 - 28514952-28518152 26 9.8
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285... 26 9.8
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 29.1 bits (62), Expect = 1.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 107 SCSCTDGGSCRSHSRTPW 54
SCSC+D G C ++ PW
Sbjct: 314 SCSCSDKGGCLGSNKGPW 331
>08_02_0041 + 11531010-11531366,11531409-11531657
Length = 201
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 262 AAHRLRAHGDTHTRASAPATWAD 330
A + HG+ H APATWA+
Sbjct: 2 AGSQSSCHGENHDEPDAPATWAE 24
>06_03_1172 - 28147957-28148274,28149362-28149877
Length = 277
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 155 AGHGPPPRSDAASLRCSCSCTDGGSC 78
A G + AA C+C+C GGSC
Sbjct: 103 AAAGLAAAAAAAPCSCNCACCGGGSC 128
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 269 CAAPPSCYTSCAEAVR 222
C APP CY C E R
Sbjct: 233 CCAPPPCYQGCYEGCR 248
>06_01_1187 +
10216017-10216022,10216327-10216367,10217800-10217869,
10217910-10218101,10218237-10218281
Length = 117
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 318 CWCARSSMSIPMGTQPVRRSTELLYELR*GSPLP 217
CW +S+ S P G P R E E G PLP
Sbjct: 14 CWRPQSNASPPTGNGPGLRPAEQGVEEEAGRPLP 47
>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
Length = 519
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 155 AGHGPPPRSD-AASLRCSCSCTDGGSCRSHSRTP 57
A H P SD A+ RC + SC SH+ P
Sbjct: 158 AAHSSAPTSDLCAAARCPLDAIETDSCASHACPP 191
>06_03_1291 + 29062073-29062477
Length = 134
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 170 LRVSVAGHGPPPRSDAASLRCSCSCTDGGSCR 75
LR+ AG+G D A+ CSCS CR
Sbjct: 103 LRLVAAGNGNAKAKDDAAAMCSCSSDTEILCR 134
>12_02_1031 +
25537495-25537552,25538774-25538836,25538966-25539279,
25539361-25539612,25539698-25540411
Length = 466
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +3
Query: 228 CLSATRIAARWSGAPAACPWGYSYSSERTSNLGGPGGYS 344
C S R +A A AACPW S GG G S
Sbjct: 415 CASQARASA---SASAACPWAVRMDRSTASLAGGSDGGS 450
>07_03_1102 - 23981362-23982219
Length = 285
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 79 HDPPSVQEQLQRNDAASLRGGGP*PATETRSR 174
H PP Q+Q +R+ ++SL P P+ + R+R
Sbjct: 123 HPPPQQQQQPRRSLSSSLFYAHPSPSPQLRTR 154
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 151 PATETRSRAVLVLVLEHVGALDGQRTASAQLV*QLGGAAHRLRAHGDTHTRASAPAT 321
PAT + + + L+ L R A+ + Q+GG AH + A D + R A+
Sbjct: 252 PATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKVDEYARGMVSAS 308
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +1
Query: 256 GGAAHRLRAHGDTHTRASAP---ATWADPEDTPT 348
GG+ H AHG H A+AP ++WA P P+
Sbjct: 99 GGSHHAHYAHGHGHAHAAAPSPSSSWA-PARAPS 131
>01_02_0016 - 10199085-10199170,10200649-10201456
Length = 297
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 264 GAPAACPWGYS--YSSERTSNLGGPGG 338
GAPA PW YS Y+SE T PGG
Sbjct: 130 GAPAPSPWMYSKEYASE-TEAARWPGG 155
>12_01_0416 -
3294386-3294513,3294583-3294743,3295058-3295151,
3295271-3295319
Length = 143
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 82 DPPSVQEQLQRNDAASLRGGG 144
D PS + LQR D A+ GGG
Sbjct: 2 DEPSRRADLQRRDTAATTGGG 22
>08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065
Length = 393
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 283 HGDTHTRASAPATWADPED 339
HG H+ SAPA PED
Sbjct: 210 HGHGHSHGSAPAAATSPED 228
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 155 AGHGPPPRSDAASLRCSCSCTDGGSCRSHSRTP 57
A H PP S S + + GG C + TP
Sbjct: 35 AAHATPPASGGCSSHVTPPASGGGGCYGYRVTP 67
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 25.8 bits (54), Expect = 9.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 246 IAARWSGAPAACPW 287
IAA+W G+P C W
Sbjct: 51 IAAQWRGSPDCCAW 64
>06_03_0729 +
23927656-23927661,23927774-23927923,23928316-23928567,
23929072-23929209,23931213-23932730
Length = 687
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 143 PPPRSDAASLRCSCSCTDGG 84
PPP S AA RCS S GG
Sbjct: 217 PPPPSPAAHRRCSSSGGGGG 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,748,785
Number of Sequences: 37544
Number of extensions: 184828
Number of successful extensions: 711
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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