Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B04
         (353 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC073748-1|AAH73748.1|  118|Homo sapiens Unknown (protein for IM...    29   5.4  
AB065601-1|BAC05829.1|  984|Homo sapiens seven transmembrane hel...    28   9.5  
AK021860-1|BAB13917.1|  251|Homo sapiens protein ( Homo sapiens ...    23   9.6  

>BC073748-1|AAH73748.1|  118|Homo sapiens Unknown (protein for
           IMAGE:6301005) protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -1

Query: 167 RVSVAGHGPPPRSDAASLRCSCSCTDGGSCRSHSRTP 57
           R SV+ H  P  S AA L    SC D G  R   R P
Sbjct: 30  RKSVSRHWHPGTSGAAELGGRSSCEDPGCPRDEERAP 66


>AB065601-1|BAC05829.1|  984|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 164 VSVAGHGPPPRSDAASLRCSCSCTDGGSCRSHS 66
           VS AG  PP      +LR +C C++ G   +HS
Sbjct: 588 VSFAGPPPPLLKGRGALR-ACGCSEDGEAETHS 619


>AK021860-1|BAB13917.1|  251|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11798 fis, clone HEMBA1006198, weakly similar to
           PROLINE-RICH PROTEIN MP-2 PRECURSOR. ).
          Length = 251

 Score = 23.4 bits (48), Expect(2) = 9.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 334 PGPPRLLVRSLEYEYPHGH 278
           PGPPRLL ++L    P GH
Sbjct: 91  PGPPRLLPQAL--APPQGH 107



 Score = 23.0 bits (47), Expect(2) = 9.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 337 PPGPPRLL 314
           PPGPPRLL
Sbjct: 77  PPGPPRLL 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,628,435
Number of Sequences: 237096
Number of extensions: 865774
Number of successful extensions: 2806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2805
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)