Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B04
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    26   6.6  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    26   6.6  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    26   8.7  
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 137 PRSDAASLRCSCSCTDGGSCR 75
           P S AAS+ C+ SC  G  CR
Sbjct: 504 PLSQAASIDCALSCEPGCFCR 524


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 137 PRSDAASLRCSCSCTDGGSCR 75
           P S AAS+ C+ SC  G  CR
Sbjct: 295 PLSQAASIDCALSCEPGCFCR 315


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 2    HEAVASYSRTIIRTNQPTMVYESDFYTTRRPYRSSYSVTTPRHY 133
            H    + S  + R  Q   V  +D Y  R  YRS   V +PR Y
Sbjct: 4241 HHMSHAGSSYLSRAAQDAQVGGTDTYAKRYNYRSRSDVGSPRRY 4284


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 2    HEAVASYSRTIIRTNQPTMVYESDFYTTRRPYRSSYSVTTPRHY 133
            H    + S  + R  Q   V  +D Y  R  YRS   V +PR Y
Sbjct: 4241 HHMSHAGSSYLSRAAQDAQVGGTDTYAKRYNYRSRSDVGSPRRY 4284


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 79  HDPPSVQEQLQRNDAASLRGGGP*P 153
           ++PP   +Q +R +++  RGG P P
Sbjct: 835 YEPPQPPQQRRRTESSGYRGGPPPP 859


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 86   GSCRSHSRTPWLVG*FVLSF 27
            GS +S S+ PW+VG  + SF
Sbjct: 1246 GSSQSQSQNPWIVGVMIDSF 1265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,311,618
Number of Sequences: 27780
Number of extensions: 125817
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)