Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B04
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    28   0.037
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   0.61 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   0.61 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   1.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   4.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   4.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   4.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   4.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   9.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   9.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 0.037
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
 Frame = -1

Query: 152 GHGPPP----RSDAASLRCS---CSCTDGGSCRSH-SRTPWL 51
           GHG PP    RS +AS  CS     C  GG  +SH S+ P L
Sbjct: 274 GHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPML 315


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 0.61
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 143 PPPRSDAASLRCSCSCTDG 87
           P PR ++ S   SC+C DG
Sbjct: 49  PAPRINSKSPLLSCACPDG 67



 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 228 CLSATRIAARWSGAPAACPWGYSYSSE 308
           CL A RI ++      ACP G    S+
Sbjct: 47  CLPAPRINSKSPLLSCACPDGLKLLSD 73


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 0.61
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 143 PPPRSDAASLRCSCSCTDG 87
           P PR ++ S   SC+C DG
Sbjct: 49  PAPRINSKSPLLSCACPDG 67



 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 228 CLSATRIAARWSGAPAACPWGYSYSSE 308
           CL A RI ++      ACP G    S+
Sbjct: 47  CLPAPRINSKSPLLSCACPDGLKLLSD 73


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 125 AASLRCSCSCTDGGSCRS 72
           A ++RC      GGSCR+
Sbjct: 80  ACAIRCLAQRRKGGSCRN 97


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 77  YTTRRPYRSSYSVTTPRHYVVVDRDPLP 160
           Y TR P     S  +PR+Y+  + D  P
Sbjct: 508 YDTREPVDQQLSGISPRNYMYPNIDISP 535


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 335 SGSAQVAGALARV*VSPWARSRCAAPPSCYTSC 237
           SG A +    + V  SP A S    PP  + SC
Sbjct: 456 SGEAGIEEVKSPVLRSPPAFSHSRCPPEIHKSC 488


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 335 SGSAQVAGALARV*VSPWARSRCAAPPSCYTSC 237
           SG A +    + V  SP A S    PP  + SC
Sbjct: 456 SGEAGIEEVKSPVLRSPPAFSHSRCPPEIHKSC 488


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +3

Query: 258 WSGAPAACPWGYSY 299
           W+G     PW Y Y
Sbjct: 163 WTGKNITTPWDYYY 176


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +3

Query: 258 WSGAPAACPWGYSY 299
           W+G     PW Y Y
Sbjct: 178 WTGKNITTPWDYYY 191


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +3

Query: 258 WSGAPAACPWGYSY 299
           W+G     PW Y Y
Sbjct: 66  WTGKNITTPWDYYY 79


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 344 GVSSGSAQVAGALARV*VSPWARSRCAAPPSCYT 243
           G S GSA +  A+  + +S         P  CYT
Sbjct: 340 GTSQGSAGLPSAILAMRLSHPLHGNLLPPGVCYT 373


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/41 (19%), Positives = 23/41 (56%)
 Frame = +2

Query: 20  YSRTIIRTNQPTMVYESDFYTTRRPYRSSYSVTTPRHYVVV 142
           Y+  + +TN+ + ++ +  ++ +RP     S  +PR  +++
Sbjct: 736 YAALLTKTNRISRIFNASKHSAKRP-----SFISPRSQLII 771


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 8   AVASYSRTIIRTNQPTMVYESDFYTTRRPYRS 103
           ++ S SR+  RT+     YE   +  R  YR+
Sbjct: 216 SLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRN 247


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 337 PPGPPRLL 314
           P GPPRLL
Sbjct: 14  PAGPPRLL 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,328
Number of Sequences: 438
Number of extensions: 1774
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)