Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B03
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    69   3e-13
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   1.1  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    27   1.9  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    27   1.9  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   2.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   2.6  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    26   3.4  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   4.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   4.5  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   5.9  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    25   5.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   7.8  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   7.8  

>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 35/73 (47%), Positives = 44/73 (60%)
 Frame = +1

Query: 262 GLDGLASHQYKKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPT 441
           GL        +K  F +   NETL LEST+K+  D I  SSF+ F +WDFPGQ+D FD  
Sbjct: 10  GLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHI--SSFIDFSVWDFPGQVDVFDAA 67

Query: 442 FDSDTIFGGCGAL 480
           FD ++IF   GAL
Sbjct: 68  FDFESIFTQVGAL 80



 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
 Frame = +3

Query: 240 KPR-ILLMGLRRSGKSSIQKVVFHKMSPK*NTVF 338
           KPR I+LMGLRRSGKSSIQKVVF+KM P   T+F
Sbjct: 2   KPRKIILMGLRRSGKSSIQKVVFYKMPPN-ETLF 34


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 240 KPRILLMGLRRSGKSSIQKVVF 305
           + ++LLMG   SGKSS++ +VF
Sbjct: 2   RKKVLLMGRSGSGKSSMRSIVF 23


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 213 DNTSLQDDHKPRILLMGLRRSGKSSIQKVV 302
           +N S +D    ++LL+G   SGKS+I K +
Sbjct: 25  ENASKKDKKIYKVLLLGASDSGKSTISKQI 54


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 349 NKIVTDDINNSSFVQFQIWDFPGQIDFFDPTFDSDTI 459
           +K +T D   SS  Q ++W+F G      P  +SDT+
Sbjct: 43  SKTMTLDAKPSSIDQLRVWNFDGSSTGQAPGNNSDTL 79


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 216 NTSLQDDHKPRILLMGLRRSGKSSIQKVVFHKM 314
           +TS  D   PR+++ G + SGKSS  + + +++
Sbjct: 323 STSKSDYVVPRLMVCGPKGSGKSSFSRYITNRL 355


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 213 DNTSLQDDHKPRILLMGLRRSGKSSIQKVVFHKMSPK*NTVFR 341
           DN ++      R+ ++G   +GKS++ KV+  ++ P+   VF+
Sbjct: 710 DNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIPQEGKVFK 752


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 259 IRRIRGLWSSCRDVLSPS 206
           IRR+ GLW+  +DV  P+
Sbjct: 319 IRRLEGLWNKYKDVFLPN 336


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319 RNETLCLESTN-KIVTDDINNSSFVQFQIWDFPGQIDFFD 435
           R   + ++ST   +   D+   +F  FQ  D PG +DF D
Sbjct: 186 RERVMSIKSTPLTLAVSDMKGKTFA-FQCIDTPGHVDFVD 224


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 181 ATGRLNKTVMEITHLYKMTTNL 246
           + G  NK ++E  HLY   TNL
Sbjct: 18  SAGLTNKDIVETNHLYPTITNL 39


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 330 CFISVTSYERPLFVLMTCQTV*APLEEYEVCGHLVEMCYLHHRFVQTARS*NFR 169
           C  S+   ++PL+  +TCQ     L    VC      C+  H  V      +FR
Sbjct: 35  CTYSMGYLKQPLYACLTCQKASGSLN--AVCYSCSISCHADHDLVDLFNKRHFR 86


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 201 NGDGDNTSLQDDHKPRILLMGLRRSGKS 284
           NGD +   +  D  P +L +GLRRS K+
Sbjct: 132 NGDRNTRVIVADINPDMLSVGLRRSKKT 159


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = +3

Query: 249 ILLMGLRRSGKSSIQKVVFHKMSPK 323
           I+L+G+R +GK++I K++  +++ K
Sbjct: 866 IILIGMRGAGKTTIGKIIAKQLNFK 890


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 298 WSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQI 423
           +S I C  N+   +E+   IV    +N  FV  Q W+ PG++
Sbjct: 78  FSNIPCLYNDEH-VEAWKPIVQAIHDNDCFVFIQFWNLPGEL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,540
Number of Sequences: 5004
Number of extensions: 39882
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)