Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B03
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0339 - 17721664-17722407,17722921-17723556                       27   6.0  
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    27   6.0  

>12_02_0339 - 17721664-17722407,17722921-17723556
          Length = 459

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 168 PENFSYGPFEQNGDGDNTSLQDDHKPRILLMGLRRS 275
           P+  S GPF  +GD  N    +DHK R LL  LRR+
Sbjct: 61  PQVVSLGPFH-HGD-PNLLPMEDHKRRALLHFLRRA 94


>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 337 LESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPTFDSDTIFG 465
           L+    ++  D +NSS V +Q +D+P  +      F  D + G
Sbjct: 136 LQDNGNLILRDASNSSNVLWQSFDYPTDVMLIGAKFGLDKVTG 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,708
Number of Sequences: 37544
Number of extensions: 226655
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)