Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B03
(481 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016668-1|AAH16668.1| 399|Homo sapiens Ras-related GTP binding... 95 2e-19
AL139260-1|CAI23049.1| 399|Homo sapiens Ras-related GTP binding... 95 2e-19
AF323609-1|AAG45221.1| 399|Homo sapiens GTPase-interacting prot... 95 2e-19
AF272035-1|AAG32662.1| 399|Homo sapiens Rag C protein. 95 2e-19
AL138717-3|CAB99362.1| 400|Homo sapiens protein ( onical ubiqui... 94 3e-19
AF272036-1|AAG32663.1| 400|Homo sapiens Rag D protein. 94 3e-19
>BC016668-1|AAH16668.1| 399|Homo sapiens Ras-related GTP binding C
protein.
Length = 399
Score = 94.7 bits (225), Expect = 2e-19
Identities = 46/73 (63%), Positives = 51/73 (69%)
Frame = +1
Query: 262 GLDGLASHQYKKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPT 441
GL +K F + NETL LESTNKI DDI+NSSFV FQIWDFPGQ+DFFDPT
Sbjct: 68 GLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT 127
Query: 442 FDSDTIFGGCGAL 480
FD + IF G GAL
Sbjct: 128 FDYEMIFRGTGAL 140
Score = 62.5 bits (145), Expect = 7e-10
Identities = 39/73 (53%), Positives = 43/73 (58%), Gaps = 14/73 (19%)
Frame = +3
Query: 162 SFPENFSYGPFEQN--------------GDGDNTSLQDDHKPRILLMGLRRSGKSSIQKV 299
SFP++F YG E+ G G D KPRILLMGLRRSGKSSIQKV
Sbjct: 21 SFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPRILLMGLRRSGKSSIQKV 80
Query: 300 VFHKMSPK*NTVF 338
VFHKMSP T+F
Sbjct: 81 VFHKMSPN-ETLF 92
>AL139260-1|CAI23049.1| 399|Homo sapiens Ras-related GTP binding C
protein.
Length = 399
Score = 94.7 bits (225), Expect = 2e-19
Identities = 46/73 (63%), Positives = 51/73 (69%)
Frame = +1
Query: 262 GLDGLASHQYKKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPT 441
GL +K F + NETL LESTNKI DDI+NSSFV FQIWDFPGQ+DFFDPT
Sbjct: 68 GLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT 127
Query: 442 FDSDTIFGGCGAL 480
FD + IF G GAL
Sbjct: 128 FDYEMIFRGTGAL 140
Score = 62.5 bits (145), Expect = 7e-10
Identities = 39/73 (53%), Positives = 43/73 (58%), Gaps = 14/73 (19%)
Frame = +3
Query: 162 SFPENFSYGPFEQN--------------GDGDNTSLQDDHKPRILLMGLRRSGKSSIQKV 299
SFP++F YG E+ G G D KPRILLMGLRRSGKSSIQKV
Sbjct: 21 SFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPRILLMGLRRSGKSSIQKV 80
Query: 300 VFHKMSPK*NTVF 338
VFHKMSP T+F
Sbjct: 81 VFHKMSPN-ETLF 92
>AF323609-1|AAG45221.1| 399|Homo sapiens GTPase-interacting protein
2 protein.
Length = 399
Score = 94.7 bits (225), Expect = 2e-19
Identities = 46/73 (63%), Positives = 51/73 (69%)
Frame = +1
Query: 262 GLDGLASHQYKKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPT 441
GL +K F + NETL LESTNKI DDI+NSSFV FQIWDFPGQ+DFFDPT
Sbjct: 68 GLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT 127
Query: 442 FDSDTIFGGCGAL 480
FD + IF G GAL
Sbjct: 128 FDYEMIFRGTGAL 140
Score = 62.5 bits (145), Expect = 7e-10
Identities = 39/73 (53%), Positives = 43/73 (58%), Gaps = 14/73 (19%)
Frame = +3
Query: 162 SFPENFSYGPFEQN--------------GDGDNTSLQDDHKPRILLMGLRRSGKSSIQKV 299
SFP++F YG E+ G G D KPRILLMGLRRSGKSSIQKV
Sbjct: 21 SFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPRILLMGLRRSGKSSIQKV 80
Query: 300 VFHKMSPK*NTVF 338
VFHKMSP T+F
Sbjct: 81 VFHKMSPN-ETLF 92
>AF272035-1|AAG32662.1| 399|Homo sapiens Rag C protein.
Length = 399
Score = 94.7 bits (225), Expect = 2e-19
Identities = 46/73 (63%), Positives = 51/73 (69%)
Frame = +1
Query: 262 GLDGLASHQYKKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPT 441
GL +K F + NETL LESTNKI DDI+NSSFV FQIWDFPGQ+DFFDPT
Sbjct: 68 GLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT 127
Query: 442 FDSDTIFGGCGAL 480
FD + IF G GAL
Sbjct: 128 FDYEMIFRGTGAL 140
Score = 62.5 bits (145), Expect = 7e-10
Identities = 39/73 (53%), Positives = 43/73 (58%), Gaps = 14/73 (19%)
Frame = +3
Query: 162 SFPENFSYGPFEQN--------------GDGDNTSLQDDHKPRILLMGLRRSGKSSIQKV 299
SFP++F YG E+ G G D KPRILLMGLRRSGKSSIQKV
Sbjct: 21 SFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPRILLMGLRRSGKSSIQKV 80
Query: 300 VFHKMSPK*NTVF 338
VFHKMSP T+F
Sbjct: 81 VFHKMSPN-ETLF 92
>AL138717-3|CAB99362.1| 400|Homo sapiens protein ( onical ubiquitin
conjugating ).).
Length = 400
Score = 93.9 bits (223), Expect = 3e-19
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = +1
Query: 262 GLDGLASHQYKKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPT 441
GL +K F + NETL LESTNKI +D++NSSFV FQIWDFPGQIDFFDPT
Sbjct: 69 GLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPT 128
Query: 442 FDSDTIFGGCGAL 480
FD + IF G GAL
Sbjct: 129 FDYEMIFRGTGAL 141
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +3
Query: 240 KPRILLMGLRRSGKSSIQKVVFHKMSPK*NTVF 338
KPRILLMGLRRSGKSSIQKVVFHKMSP T+F
Sbjct: 62 KPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLF 93
>AF272036-1|AAG32663.1| 400|Homo sapiens Rag D protein.
Length = 400
Score = 93.9 bits (223), Expect = 3e-19
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = +1
Query: 262 GLDGLASHQYKKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPT 441
GL +K F + NETL LESTNKI +D++NSSFV FQIWDFPGQIDFFDPT
Sbjct: 69 GLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPT 128
Query: 442 FDSDTIFGGCGAL 480
FD + IF G GAL
Sbjct: 129 FDYEMIFRGTGAL 141
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +3
Query: 240 KPRILLMGLRRSGKSSIQKVVFHKMSPK*NTVF 338
KPRILLMGLRRSGKSSIQKVVFHKMSP T+F
Sbjct: 62 KPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLF 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,746,997
Number of Sequences: 237096
Number of extensions: 1236682
Number of successful extensions: 2259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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