Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B03
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-7|CAB60290.1|  338|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AL110480-3|CAB60328.1|  338|Caenorhabditis elegans Hypothetical ...    46   1e-05
AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical ...    28   4.0  
AC006678-3|AAK68393.1|  212|Caenorhabditis elegans Hypothetical ...    28   4.0  
U80031-1|AAB37611.1|  392|Caenorhabditis elegans Downstream of d...    27   7.0  
AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical...    27   7.0  
Z49912-5|CAA90136.1|  312|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z73426-7|CAB60290.1|  338|Caenorhabditis elegans Hypothetical
           protein Y24F12A.2 protein.
          Length = 338

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 26/63 (41%), Positives = 37/63 (58%)
 Frame = +1

Query: 292 KKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPTFDSDTIFGGC 471
           +K  F +   NET+ +EST +I  D I  SSF+ F+  +FPGQ+  FD + D   +F  C
Sbjct: 43  RKVVFQKMSPNETMFVESTARITRDTIC-SSFINFETIEFPGQMCPFDDSLDPVGVFQKC 101

Query: 472 GAL 480
            AL
Sbjct: 102 EAL 104



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +3

Query: 234 DHKPRILLMGLRRSGKSSIQKVVFHKMSPK*NTVF 338
           D +P ++LMG +RSGK+SI+KVVF KMSP   T+F
Sbjct: 24  DSRPTVILMGHKRSGKTSIRKVVFQKMSPN-ETMF 57


>AL110480-3|CAB60328.1|  338|Caenorhabditis elegans Hypothetical
           protein Y24F12A.2 protein.
          Length = 338

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 26/63 (41%), Positives = 37/63 (58%)
 Frame = +1

Query: 292 KKWSFIRCHRNETLCLESTNKIVTDDINNSSFVQFQIWDFPGQIDFFDPTFDSDTIFGGC 471
           +K  F +   NET+ +EST +I  D I  SSF+ F+  +FPGQ+  FD + D   +F  C
Sbjct: 43  RKVVFQKMSPNETMFVESTARITRDTIC-SSFINFETIEFPGQMCPFDDSLDPVGVFQKC 101

Query: 472 GAL 480
            AL
Sbjct: 102 EAL 104



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +3

Query: 234 DHKPRILLMGLRRSGKSSIQKVVFHKMSPK*NTVF 338
           D +P ++LMG +RSGK+SI+KVVF KMSP   T+F
Sbjct: 24  DSRPTVILMGHKRSGKTSIRKVVFQKMSPN-ETMF 57


>AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical
           protein Y97E10B.1 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 154 TWVHFPKILATGRLNKTVME--ITHL 225
           TW+HFP IL  G     V E  ITHL
Sbjct: 417 TWIHFPPILPNGLEKYEVNENVITHL 442


>AC006678-3|AAK68393.1|  212|Caenorhabditis elegans Hypothetical
           protein R05G9.3 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 192 FEQN-GDGDNTSLQDDHKPRILLMGLRRSGKSS 287
           F  N  D DN +L DD KP +   G+ R  K S
Sbjct: 177 FSSNTNDEDNNTLDDDEKPDLPHQGVHRQRKKS 209


>U80031-1|AAB37611.1|  392|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 20 protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 435 IEEVNLSRKVPYLKLYETTIVDII-GYYFVCGF*TQCFISVTSYERPL 295
           +E+ +LS    YLK Y      I  GYY + G  T  F +   Y +PL
Sbjct: 208 VEKFSLSLVAFYLKTYRGVNFSIEPGYYSIDGKRTSAFTTTGFYMKPL 255


>AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical
           protein F54D12.1 protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 259 IRRIRGLWSSCRDVLSPSPFCSNGP*LKFS 170
           I  +  + S+C+D L P+P C + P   FS
Sbjct: 135 IEYVYSITSNCKDWLKPTPTCQDCPVTMFS 164


>Z49912-5|CAA90136.1|  312|Caenorhabditis elegans Hypothetical
           protein T24F1.1 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 240 KPRILLMGLRRSGKSSIQKVVF 305
           K ++LLMG   SGK+S++ ++F
Sbjct: 4   KRKVLLMGKSGSGKTSMRSIIF 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,948,182
Number of Sequences: 27780
Number of extensions: 219380
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)