Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B03
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.42 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.1  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 473 PHPPKIVSESNVGSKKSICPGKSHI*NCTKLLL 375
           PH P +V+    G +  ICPGK  +    +L+L
Sbjct: 450 PHSPLLVAPFGAGRR--ICPGKRFVDLALQLIL 480


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 313 CHRNETLCLESTNKIVTDDINN 378
           C RNE + +    KI+TD + +
Sbjct: 487 CARNELMMILKEIKIITDQLKS 508


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -2

Query: 429 EVNLSRKVPYLKLYETTIVDIIGYYFVC 346
           E+N  R +PY+++ E      + + + C
Sbjct: 37  EMNTERLLPYVEIIEQPASKALRFRYEC 64


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -2

Query: 429 EVNLSRKVPYLKLYETTIVDIIGYYFVC 346
           E+N  R +PY+++ E      + + + C
Sbjct: 37  EMNTERLLPYVEIIEQPASKALRFRYEC 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,132
Number of Sequences: 438
Number of extensions: 2854
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)