Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B02
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   254   5e-70
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   254   5e-70
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  254 bits (621), Expect = 5e-70
 Identities = 118/146 (80%), Positives = 127/146 (86%)
 Frame = +3

Query: 42  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 221
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 222 VRIPKEQGLLSFWRGNFANVIRYFPTHALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 401
           VRIPKEQG LS+WRGN ANVIRYFPT ALNFAFKDKYKQVFLGGVDKNTQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 402 XXXXXXXTSLCFVYPLDFARTRLAAD 479
                  TSLCFVYPLDFARTRLAAD
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAAD 146



 Score = 27.9 bits (59), Expect = 0.060
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = +3

Query: 69  FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 248
           F  +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 249 LSFWRGNFANVIRYFPTHALNFAFKD 326
              +RG   +V       A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.1 bits (57), Expect = 0.10
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 129 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 287
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  254 bits (621), Expect = 5e-70
 Identities = 118/146 (80%), Positives = 127/146 (86%)
 Frame = +3

Query: 42  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 221
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 222 VRIPKEQGLLSFWRGNFANVIRYFPTHALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 401
           VRIPKEQG LS+WRGN ANVIRYFPT ALNFAFKDKYKQVFLGGVDKNTQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 402 XXXXXXXTSLCFVYPLDFARTRLAAD 479
                  TSLCFVYPLDFARTRLAAD
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAAD 146



 Score = 27.9 bits (59), Expect = 0.060
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = +3

Query: 69  FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 248
           F  +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 249 LSFWRGNFANVIRYFPTHALNFAFKD 326
              +RG   +V       A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.1 bits (57), Expect = 0.10
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 129 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 287
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 290 VPDDIGEVTTPE*EQTLLLGNADEGVDDTLVAL--VLGDLF 174
           +PD   E+T P  E+T+ + N  E + +T V    +L D F
Sbjct: 364 IPDK--EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 186 EDQRYKGI-VDAFVRIPKEQGLLSFWRGNFANVIRYFPTHALN 311
           +DQ+Y+ + V+ + ++ KEQG +S   G     +   P + +N
Sbjct: 665 QDQQYQVVSVEQYQQL-KEQGQISQVGGGIQQNVEVLPENLVN 706


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 184 AICLLTCWT 158
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 184 AICLLTCWT 158
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 305 RMSREVPDDIGEVTTPE 255
           R +RE+PDD+ +   P+
Sbjct: 554 RANRELPDDLRQKVLPD 570


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 305 RMSREVPDDIGEVTTPE 255
           R +RE+PDD+ +   P+
Sbjct: 554 RANRELPDDLRQKVLPD 570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.123    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,710
Number of Sequences: 438
Number of extensions: 2105
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)