Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B01
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 79 1e-15
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 79 1e-15
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 79 1e-15
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 30 1.00
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 30 1.00
U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 5.3
U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical pr... 27 7.0
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormo... 27 9.3
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 79.4 bits (187), Expect = 1e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +1
Query: 202 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 381
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 382 YAILGFALSE 411
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 79.4 bits (187), Expect = 1e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +1
Query: 202 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 381
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 382 YAILGFALSE 411
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 79.4 bits (187), Expect = 1e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +1
Query: 202 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 381
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 382 YAILGFALSE 411
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 29.9 bits (64), Expect = 1.00
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 162 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 37
C++C +HK VA+ S P CR + G+ VL TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 1.00
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 162 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 37
C++C +HK VA+ S P CR + G+ VL TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131
>U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical
protein R57.2 protein.
Length = 216
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = -1
Query: 162 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHRE 22
C H C + V + R D C I+H + + N+++R+
Sbjct: 113 CHHMCVYETDQSVTRNMLTNMRKDSQCRIKHLSSILYCASQNRDNRK 159
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 171 LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHREGGDR 10
LC + CC WS + C C G QS + C+ + D+ H +G DR
Sbjct: 698 LCEGQSCCNWS-EWCHWSMCDKECGGGQSIRTR-TCLNSAGSPDSSCHCDGPDR 749
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 27.9 bits (59), Expect = 4.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 168 CVCRHCCEWSHKSCV 124
C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 231 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 82
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 231 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 82
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 231 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 82
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical
protein F38E1.6 protein.
Length = 296
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 107 GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 199
G+L S +++ DH QC H++ + L L N+
Sbjct: 85 GILKSVEEII-DHELQCAHSYSYYILVLANF 114
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 189 RCNWNNLCVCRHCCEWSHKSC 127
RC N C H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = -1
Query: 312 NTRSGSSYSNCRCASTNEFGSRVNVFGDRG-GLEGAHS**LSRCNWNNLCVCRHCCEWSH 136
+ + G S C+ TN+ + G+RG G + + L N +N C R C
Sbjct: 1801 SAKCGESCPPCKAFCTNKCEHQSCGAGERGFGRDCSKLCALCVNNCSNKCAHRSCTLKCF 1860
Query: 135 KSCVAEDSSPGCRGDQSCGIQHFCV 61
+ C + + C CG H C+
Sbjct: 1861 EECNVKPCTEPCTDKLKCG--HACL 1883
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 33 LCCQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 146
+ C+ S + N VC P + C Q SSCA +
Sbjct: 1 MACKCSTSTNISNRVCSCSPLPSTSSCGCQASSSCANS 38
>AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 135 protein.
Length = 362
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 165 VCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQH 70
+CR C + + ++ S+ CR D+SC I +
Sbjct: 24 ICRACSAFFRRYVLSPKSAIKCRKDKSCRIHY 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,215,208
Number of Sequences: 27780
Number of extensions: 197376
Number of successful extensions: 654
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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