Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_A19
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 181 TQLLRSVQRTLNIYKMLLVILGTLVIAVTSLPISE--DKFFIDYSDGVIGEFGEHFEGDM 354
           +QL+ +++  L I   L+     L +  T+    +  DK++ +Y    +GE    F G  
Sbjct: 366 SQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYKMYELGELASSFVGPK 425

Query: 355 V 357
           V
Sbjct: 426 V 426


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 484 LRRNHLLRCDKLLYDSAISSYRP*VHFVHP 395
           ++R H +  + +L  SA S +    HF HP
Sbjct: 271 IKRKHNVFVNNILAASACSLFVVIFHFAHP 300


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 412 LKGGTKRWPNRTVIY 456
           LK G KR P R ++Y
Sbjct: 147 LKYGVKRTPRRMIVY 161


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 148 PNWSFAPFK 122
           P+WSFA FK
Sbjct: 109 PDWSFAEFK 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,298
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)