Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_A13
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   297   3e-83
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   297   3e-83
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  297 bits (730), Expect = 3e-83
 Identities = 137/167 (82%), Positives = 148/167 (88%)
 Frame = +3

Query: 9   SKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 188
           SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D FVRIPKEQG LS+WRGN ANVIRY
Sbjct: 24  SKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRY 83

Query: 189 FPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRL 368
           FPTQALNFAFKDKYKQVFLGGVDKNTQF RYF            TSLCFVYPLDFARTRL
Sbjct: 84  FPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRL 143

Query: 369 AADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYR 509
           AADVGK  G+REFTGLGNC++KIFK+DG+TGLYRGFGVSVQGIIIYR
Sbjct: 144 AADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYR 190



 Score = 32.7 bits (71), Expect = 0.002
 Identities = 26/129 (20%), Positives = 50/129 (38%)
 Frame = +3

Query: 87  DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 266
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D  + +      K T
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKT 210

Query: 267 QFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFTGLGNCISKIFKS 446
            F   +             S    YP D  R R+    G+   +  +    +C + I+K+
Sbjct: 211 PFLISWGIAQVVTTVAGIVS----YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKT 266

Query: 447 DGLTGLYRG 473
           +G    ++G
Sbjct: 267 EGGNAFFKG 275



 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 27  PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 185
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  297 bits (730), Expect = 3e-83
 Identities = 137/167 (82%), Positives = 148/167 (88%)
 Frame = +3

Query: 9   SKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 188
           SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D FVRIPKEQG LS+WRGN ANVIRY
Sbjct: 24  SKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRY 83

Query: 189 FPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRL 368
           FPTQALNFAFKDKYKQVFLGGVDKNTQF RYF            TSLCFVYPLDFARTRL
Sbjct: 84  FPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRL 143

Query: 369 AADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYR 509
           AADVGK  G+REFTGLGNC++KIFK+DG+TGLYRGFGVSVQGIIIYR
Sbjct: 144 AADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYR 190



 Score = 32.7 bits (71), Expect = 0.002
 Identities = 26/129 (20%), Positives = 50/129 (38%)
 Frame = +3

Query: 87  DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 266
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D  + +      K T
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKT 210

Query: 267 QFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFTGLGNCISKIFKS 446
            F   +             S    YP D  R R+    G+   +  +    +C + I+K+
Sbjct: 211 PFLISWGIAQVVTTVAGIVS----YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKT 266

Query: 447 DGLTGLYRG 473
           +G    ++G
Sbjct: 267 EGGNAFFKG 275



 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 27  PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 185
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 82  AICLLTCWT 56
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 82  AICLLTCWT 56
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 170 EVTTPE*EQTLLLGNADEGVDDTLVAL--VLGDLF 72
           E+T P  E+T+ + N  E + +T V    +L D F
Sbjct: 368 EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 440 EDLADAVTETGELALPITLANIGGETC 360
           E + D V   GE+A  ++  +  GE C
Sbjct: 498 EGIVDIVMANGEVATSLSDGSYFGEIC 524


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 440 EDLADAVTETGELALPITLANIGGETC 360
           E + D V   GE+A  ++  +  GE C
Sbjct: 466 EGIVDIVMANGEVATSLSDGSYFGEIC 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,412
Number of Sequences: 438
Number of extensions: 2680
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)