Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_A09
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   1.00 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   3.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   7.0  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 431 IFIEKIMYFLYFTKFNVLR-VKKIIYD*IIINMSYFYFLKLKQK*ITTSCPKVFFLSSCI 255
           + ++  +YFL + + N +R V + +    I   +Y Y++  + K +  + PK F+L S I
Sbjct: 186 MMVQVCLYFLCWGEANNVRFVPECLC--FIFECAYDYYISSEAKDVDAALPKEFYLDSVI 243

Query: 254 IISFNVIY 231
              +  I+
Sbjct: 244 TPIYRFIH 251


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -3

Query: 401  YFTKFNVLRVKKIIYD*IIINMSYFYFLKLKQK*ITTSCPKVFFLSSCIIISFNVIYN*T 222
            Y T + +L V  I+YD  +     F F +L ++     C       SC++IS   +Y   
Sbjct: 865  YSTMYTMLPVFSIVYDRDVSEKLVFLFPELYKEMREQKCFSYKNFISCVLIS---VYQGL 921

Query: 221  VKRVQLIFFY 192
            +  +QL  FY
Sbjct: 922  I--IQLFTFY 929


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 347 IINMSYFYFLKLKQK*ITTSCPKVFFLSSCIIISFNVIYN 228
           I  ++Y Y +    K      PK +FL +CI   +N++++
Sbjct: 300 IYKVAYDYLISPSFKEQKNPAPKDYFLDNCITPLYNLMHD 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,461
Number of Sequences: 5004
Number of extensions: 25107
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)