Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_A08
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 35 0.007
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 31 0.15
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 30 0.20
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 28 0.79
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 27 1.4
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 27 1.8
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 27 2.4
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.4
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 3.2
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.2
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 26 3.2
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 26 4.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.2
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 26 4.2
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 5.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 5.6
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 25 5.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.3
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 7.3
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 7.3
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 7.3
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 7.3
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.7
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 25 9.7
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.7
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 9.7
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 9.7
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 9.7
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 35.1 bits (77), Expect = 0.007
Identities = 25/95 (26%), Positives = 36/95 (37%)
Frame = +2
Query: 164 SARVSSRVLRPPGGGHTDIFGSEPEPPQRTGRRQVHNAGQRDEQKPPTNGTDAPTSNGQN 343
+ +VS + P G+ ++G P + Q H P PT +
Sbjct: 85 NTQVSHTAIPNPANGYAAVYGGPPSQLPPPPQPQSHPNVTVISASPARAIEQQPTILS-S 143
Query: 344 TLSETPHPAEVKQDSSPKVEQAPPAANMEPPKRVR 448
T S P P VK +SP V P+A PP+ R
Sbjct: 144 TDSNIPRPGTVKSSASPFVPNQNPSAPPPPPQEYR 178
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 30.7 bits (66), Expect = 0.15
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 317 DAPTSNGQNTLSETPHPAEVKQDSSPKVEQAPPAANMEPPKRVRVPPG 460
+ PTSN +SE + QDSS V + P ++ E ++ VPPG
Sbjct: 156 EQPTSNA--VVSEVNPQQQKSQDSSSFVTEKPASSEKEDKEKPLVPPG 201
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 30.3 bits (65), Expect = 0.20
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 299 PPTNGTDAPTSNGQNTLSETPHPAEVKQDSSPKVEQAPPAANMEPP 436
P T + P SN NT TP+ + + DSSPK+ A P + P
Sbjct: 42 PKTQNSAIPQSNALNT---TPNESTSQIDSSPKIPSAVPHISTPNP 84
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 0.79
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 314 TDAPTSNG-QNTLSETPHPAEVKQDSSPKVEQAPPAANMEPPKRVRVPPGGFSSG 475
T A +G N + ++ P+ + + PKV+ P PP R + GG++SG
Sbjct: 266 TSATQQSGLANNVEKSQTPSYMSANHLPKVDSKSPIPFSVPPSRATL-TGGYASG 319
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 387 ARRRSNKRHQQPTWSHRSAFAYL 455
A +RS +QQP W H SAF YL
Sbjct: 386 AEKRSADYYQQP-WVHESAFHYL 407
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 1.4
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 194 PPGGGHTDIFGSEPEPPQRTGRRQVHNAGQRDEQKPPTNGTDAPTSNGQNTLSETPHPAE 373
P G FG+ P P RT + Q + D +KP + P + ++++ E P
Sbjct: 6 PAGSKEGVSFGNLPRPEPRTSKDQQKLSISTDVKKPSHSAPVTPVRSARSSM-EQPTFRP 64
Query: 374 VKQDSSPKVEQAPP-AANMEPPK 439
V ++S V AP AA PP+
Sbjct: 65 VAKNS---VTVAPARAAGFCPPQ 84
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 257 RRQVHNAGQRDEQ--KPPTNGTDAPTSNGQNTL-SETPHPAEVKQDSSPKVEQAPPAANM 427
R+++ G+ E P G PTS+ + ++ SE+ P+E SSP + PA +
Sbjct: 54 RQEIRYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSSPVSSYSDPATSQ 113
Query: 428 EP 433
P
Sbjct: 114 LP 115
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 257 RRQVHNAGQRDEQKPPTNGTDAPTSNGQNTLSETPHPA 370
+RQ A ++ K T+G + P+SN Q S P PA
Sbjct: 235 QRQSSEAAEQPSSKNNTSGANPPSSNNQEVTS-APIPA 271
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 302 PTNGTDAPTSNGQNTLSETPHPAEVKQDSSPKVEQAPPAANMEPPKRVRV 451
P + D ++G E P E+ + P + + + N+E PKRVR+
Sbjct: 268 PFSSIDTSLASGSQITIEQRPPIEMTTITGPIITDSN-SRNLEDPKRVRI 316
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 40 YKVFLTVTGLLLFCIYLLFVTCLIIKSNQNDFHT 141
+ VFLT TG+ LF +Y L + K N + T
Sbjct: 726 FLVFLTFTGMTLFILYQLTFPYGVAKDNSSFIDT 759
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Frame = +2
Query: 233 PEPPQRTGRRQVHNAGQRDEQKPPT---NGTDAPTSNGQNTLSETPHPAEVKQDSSPKVE 403
P P R + +R PP N P NG + S P P + +++ +
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
Query: 404 QAPPAANMEPPKRVRVPP 457
P + PP R P
Sbjct: 353 LPPQGRSAPPPPPPRSAP 370
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 368 AEVKQDSSPKVEQAPPAA-NMEPPKRVRVPPGGFSS 472
A V++ ++PK+++ PP++ + PPK ++ P +S
Sbjct: 335 APVQRKTTPKIQRLPPSSIQIPPPKPMQKFPANAAS 370
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 3.2
Identities = 21/88 (23%), Positives = 30/88 (34%)
Frame = +2
Query: 194 PPGGGHTDIFGSEPEPPQRTGRRQVHNAGQRDEQKPPTNGTDAPTSNGQNTLSETPHPAE 373
PP ++ P PP + Q + T + PT++ L P P
Sbjct: 139 PPPPVRPNVMSQMPPPPSYSSSGSYSQTYQSNANY--TASSPLPTASANAPLP-VPPPRR 195
Query: 374 VKQDSSPKVEQAPPAANMEPPKRVRVPP 457
V Q+SS P A V+ PP
Sbjct: 196 VSQNSSYASGSVPAATAASTASPVKKPP 223
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 164 SARVSSRVLRPPGGGHTDIFGSEPEPPQ-RTGRRQVHNAGQRDEQKPPTNGTDAPTSNGQ 340
S + R+ + PGG +TD S P + H + Q DE KP T SNG
Sbjct: 291 STYMQPRMSQMPGGLYTDTSTSSSVPINVKPNSTTPHASLQIDENKPTTR-IQVRLSNGG 349
Query: 341 NTL 349
T+
Sbjct: 350 RTV 352
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 326 TSNGQNTLSETPHPAEV----KQDSSPKVEQAPPAANMEPPKRVRVPP 457
T + Q++ TP P + + +SP++ APP + P + PP
Sbjct: 188 TESDQDSTPATPFPMPMHLAEETATSPEISDAPPLSGNVDPLPINSPP 235
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 293 QKPPTNGTDAPTSNGQNTLSETPHPAEVKQDSSPKVEQAPPAANMEPP 436
Q+P +G +APT + N++ +P P+ ++ P N PP
Sbjct: 146 QEPSASGVNAPTVSAPNSM-VSPPPSFQPPSAAAPATSLPSDYNPPPP 192
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 284 RDEQKPPTNGTDAPTSNGQNTLSETPHPAEVKQDSSPKVEQAPPAANME-PPKRVRVP 454
+ E +PPT+ P+ + S P P++ S A PAA ++ PP +P
Sbjct: 134 QSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 4.2
Identities = 7/26 (26%), Positives = 17/26 (65%)
Frame = +1
Query: 37 LYKVFLTVTGLLLFCIYLLFVTCLII 114
+YK+ G+++ +Y++ VTC ++
Sbjct: 41 IYKINKNRVGIIILFLYIMIVTCYVL 66
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 276 LVNGTNRNRQPMALTHLLRMVKTLYQKPHIPLK*NRIAR 392
LV G N NR +AL + + + ++ H+P + +++ R
Sbjct: 310 LVEGANINRSLLALGNCINSLCEPRRRQHVPYRDSKLTR 348
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 272 NAGQRDEQKPPTNGTDAPTSNGQNTLSETPHPAE-VKQDSSPKVEQAPPAANMEPPKRVR 448
N G + P T+ + TS N +TP P+E V + + A M+ ++VR
Sbjct: 241 NVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSENVHLSARQRNALKRKARQMKNSQKVR 300
Query: 449 V 451
V
Sbjct: 301 V 301
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 195 GRSTLLDTLAESLRPTLKGVEVILIRFN 112
GR+ LLD + + LR + G+E + I FN
Sbjct: 261 GRAILLDDVIDRLRNSPDGLENVNITFN 288
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 7.3
Identities = 30/116 (25%), Positives = 36/116 (31%), Gaps = 20/116 (17%)
Frame = +2
Query: 194 PPGGGHTDIFGSEPEPPQRT-GRRQVHNAGQRDEQKPPTNGTDAPTSNGQNTLSETPHPA 370
PP H P + R A Q QKP AP +N + S +P
Sbjct: 1534 PPAPQHPSAAALSSAPADNSMPHRSSPYAPQEPVQKPQAINNIAPATNLGTSQSFSPRMG 1593
Query: 371 EVKQDSSP--------------KVEQAP-----PAANMEPPKRVRVPPGGFSSGLW 481
V SP V AP P A M+PP + P G S W
Sbjct: 1594 PVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQPSGHDSDNW 1649
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 305 TNGTDAPTSN-GQNTLSETPHPAEVKQDSSPKVEQ 406
T+ T +PT + + T E HP +VK D+S + E+
Sbjct: 11 TSLTPSPTGSIDEYTSKEVKHPEDVKVDASYEKEE 45
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 224 GSEPEPPQRTGRRQVHNAGQRD--EQKPPTNGTDAPTSNGQNTLSE 355
GS PEPP+ + V QRD K T G + + + +N ++
Sbjct: 804 GSLPEPPKPNKQIVVQEEDQRDTLSLKTSTTGLSSHSKSAENNSTQ 849
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 134 STPFNVGLSDSARVSSRVLRPPGGGHTDIFGSEPEPPQRTGRRQVHNAGQRDEQKPPTNG 313
STP N +S R RPP G + S+ + + +GR + N R P++
Sbjct: 10 STPTNHTVSSKKRRG----RPPKGSYAAYGSSDDDDEEYSGRTRRRNRNTRPRVSAPSSS 65
Query: 314 T 316
+
Sbjct: 66 S 66
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 7.3
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Frame = +2
Query: 128 MTSTPFNVGLSDSARVSSRVLRPPGGGHTDI-----FGSEPEPPQRTGRRQV--HNAGQR 286
++STP L D + ++ V+ P GH I + + +R GR ++ H G+
Sbjct: 41 VSSTPKKGVLEDPSTLTPEVVTPRTPGHRIIKAKGAYTKDRSAKRRRGRIEIERHLLGEF 100
Query: 287 DEQKPPTNGTDAPTSNGQNTLSETPHPAEVKQDSSPK-VEQAPPAANME 430
D+ + D P + + +E P+ + +D S + + Q+P ++E
Sbjct: 101 DDNVGSNSLLDVPLYSLE---AEPLSPSVMLEDESMEGINQSPQGISVE 146
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +3
Query: 237 SPRSVLDVAKYTMLVNGTNRNRQPMALTHLLRMVKTLYQKPHIPLK*NRIAR 392
S R+ + + L G N N+ +AL + + + +++ H+P + +++ R
Sbjct: 298 SERATATKLRGSRLFEGANINKSLLALGNCINALCDPHRRAHVPYRDSKLTR 349
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 332 NGQNTLSETPHPAEVKQDSSPKVEQAPPAANMEPP 436
N ++ +++ P A S+PKVE A AA P
Sbjct: 92 NFEDEVADEPAEAPASTSSTPKVETAAAAAPAATP 126
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 420 PTWSHRSAFAYLPGASPP 473
P W ++ FAYLP P
Sbjct: 206 PVWLYQEGFAYLPEVGSP 223
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 180 AECSAPLVVDTPTSSVQSLSPRSVLDVA 263
A + VVD+ TSSV ++ P S++ A
Sbjct: 202 ASATISSVVDSATSSVSTVIPSSIISAA 229
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 144 STLVSVTRLEYPAECSAPLVVDTPT 218
S L+++ PAE S+P V TPT
Sbjct: 86 SDLLNIESPASPAEASSPFTVRTPT 110
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 213 VCPPPGGRSTLLDTLAESLRPTLKGVEVILIRFNY 109
+ P G+STLL +A L PT ++ L+ Y
Sbjct: 307 IAPNGSGKSTLLHAIACGLIPTPSSLDFYLLDREY 341
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 296 KPPTNGTDAPTSNGQNTLSETPHPAEVKQDSSPKVEQAPP 415
K PT T P + + +ETP P +V +S+ K APP
Sbjct: 142 KAPT--TTKPAAPAAQSKTETPAP-KVTSESTKKETAAPP 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,398
Number of Sequences: 5004
Number of extensions: 55159
Number of successful extensions: 211
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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