Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_A05
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    26   2.6  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   4.6  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    24   8.0  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     24   8.0  

>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 298 YLRNEYYEIYPPRRSIYK*KKYTLTITISHDTKYMSDVN*QSAN*ISSYND 146
           YLRN Y+   P     +       T+ +  D+KY + VN +SA  I  +ND
Sbjct: 100 YLRNLYFRADPNYNMRF-------TVPVLWDSKYNTIVNNESAEIIRMFND 143


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 12 PRSRSVEPPWRRCCPRQDGQRDQHSPP 92
          PR RS  PP RR  P +        PP
Sbjct: 2  PRRRSAAPPPRRAAPARSASTAAALPP 28


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 318 LLSNNLFIFEM-NIMRYIRRADQYISRKNIH*QSLYPTI 205
           LL  NLF  E  N++ YI + DQ +    IH    YP+I
Sbjct: 407 LLLKNLFFSEKDNVLTYILQ-DQAVGPSFIHKVITYPSI 444


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 269 IYLIIFISKINRLFDNNIFHNVAMF*S*DLCARDSM 376
           IYL++FI K+   + NN+  ++ MF +   C  DS+
Sbjct: 350 IYLLLFIPKLEAKYLNNLSKSL-MFSNAISCRLDSL 384


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 183 FTSDIYFVSWDIVIVNVYFFYLY 251
           FT+ +Y  +    I+N+YFFY Y
Sbjct: 61  FTNYLYAGTGFDFIMNIYFFYQY 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,663
Number of Sequences: 5004
Number of extensions: 28267
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)