Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_A04
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 235 2e-63
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 235 2e-63
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 180 1e-46
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 100 1e-22
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 47 2e-06
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 1.2
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 3.5
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 4.7
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 6.2
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 6.2
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 8.2
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 235 bits (576), Expect = 2e-63
Identities = 108/162 (66%), Positives = 124/162 (76%)
Frame = +3
Query: 6 RSKGVQYLNEIKDSVVAGFQWAAKEGAMADENLRGVRFNIYDVTLHTDAIHRGGGQIIPT 185
++K V YLNEIKDSVVA F WA+KEG M +ENLR RFNI DV LH DAIHRGGGQIIPT
Sbjct: 649 QTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPT 708
Query: 186 TRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVV 365
RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +
Sbjct: 709 ARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNI 768
Query: 366 KAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPCE 491
KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP +
Sbjct: 769 KAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLD 810
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 235 bits (576), Expect = 2e-63
Identities = 108/162 (66%), Positives = 124/162 (76%)
Frame = +3
Query: 6 RSKGVQYLNEIKDSVVAGFQWAAKEGAMADENLRGVRFNIYDVTLHTDAIHRGGGQIIPT 185
++K V YLNEIKDSVVA F WA+KEG M +ENLR RFNI DV LH DAIHRGGGQIIPT
Sbjct: 649 QTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPT 708
Query: 186 TRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVV 365
RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +
Sbjct: 709 ARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNI 768
Query: 366 KAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPCE 491
KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP +
Sbjct: 769 KAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLD 810
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 180 bits (438), Expect = 1e-46
Identities = 79/155 (50%), Positives = 107/155 (69%)
Frame = +3
Query: 27 LNEIKDSVVAGFQWAAKEGAMADENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 206
LN +K+ + GFQW +EG + DE +R V F + DV L + I+RGGGQIIPT RR Y+
Sbjct: 772 LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYS 831
Query: 207 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVN 386
LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV
Sbjct: 832 SFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVI 891
Query: 387 ESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPCE 491
+S GF DLR +T GQA Q VFDHWQ++PGDP +
Sbjct: 892 DSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLD 926
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 100 bits (240), Expect = 1e-22
Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 9/161 (5%)
Frame = +3
Query: 30 NEIKDSVVAGFQWAAKEGAMADENLRGV-----RFNIYDVTLHTDAIHRGG----GQIIP 182
+++ + VV FQ +G + E ++G+ +F+I D + + + GQ+I
Sbjct: 786 SDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVIS 845
Query: 183 TTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFV 362
+ + L PRLM +Y C++Q +G +YGV+++RRG V +E GTP F+
Sbjct: 846 VVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFI 905
Query: 363 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDP 485
VKA +PV ESFGF ++ T G A+PQ +F +++L +P
Sbjct: 906 VKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.8 bits (106), Expect = 2e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Frame = +3
Query: 60 FQWAAKEGAMADENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 239
F A K+G + ++ RF + D H ++ T L A P ++E
Sbjct: 619 FYEALKKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLE 676
Query: 240 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRS 419
P+ I P GG+ G L++R+ + + F ++A +P+N F +++D+R+
Sbjct: 677 PIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRA 734
Query: 420 NTGGQ 434
T G+
Sbjct: 735 LTKGK 739
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 80 FLGGPLEPGDDRVLDLVQVLHTL 12
F+G PL PGD V LV+++ L
Sbjct: 220 FIGRPLFPGDSSVEQLVEIIRVL 242
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 177 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 353
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 354 MFVVKAY 374
+K+Y
Sbjct: 445 ALALKSY 451
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 187 VVGMI*PPPL*MASV*RVTS*MLNRTPLKFSSAMAPSLAA 68
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 288 IYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGF 401
++ LNR++ + F Q+ V+ A L V +FGF
Sbjct: 275 LFDHLNRKKTNNFNTHQILSQSDVVLNALLSVATAFGF 312
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 277 ATSGHWISQRYTGSISLGCAVNRHAYR 197
A +G +IS YTG+ +L V RH R
Sbjct: 437 ANTGDYISDLYTGTPALKGDVTRHGTR 463
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 126 YDVTLHTDAIHRGGGQIIPTTRRCLYACL 212
+DV + D + G G IIP T++ + L
Sbjct: 146 FDVVIKADGLAAGKGVIIPKTKKEAFEAL 174
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 8.2
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = -2
Query: 179 NDLTATSVNGVSVKGDVINVESNPSQVL-----VGHGAFLGGPLEPGDDRVL 39
+ + T+ NG+ + D +N+ + + L H F G +E G R++
Sbjct: 427 SSVLTTAWNGIQINEDAVNINTGTVEPLHMYGVANHDVFRWGAIENGTARLI 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,759
Number of Sequences: 5004
Number of extensions: 39908
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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