Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_A04
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   5.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 170 TATSVNGVSVKGDVIN 123
           ++TS+N ++V+ DVIN
Sbjct: 862 SSTSINSITVEKDVIN 877


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 373 TCPSTSRSGSPPTCAPTPEGRRSRSASSITGR 468
           + PS+S S SPP       G+ S+     T +
Sbjct: 519 SAPSSSTSSSPPAKGAAAAGQPSKRNGGETNK 550



 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 427 PVLERRSAVNPNDSLTGRYAFTTNMGVPA 341
           PV+E  S+ +PN  +    + +T+   PA
Sbjct: 503 PVVETNSSPSPNPRIASAPSSSTSSSPPA 531


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 325 SRSRK-SPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSAS 453
           SRSR+ S     S   R  PS+SRS SP      P    ++  S
Sbjct: 19  SRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKS 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 276 AVGGIYGVLNRRR 314
           A GGIY + N+RR
Sbjct: 317 AEGGIYDISNKRR 329


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   RSKGVQYLNEIKDSVVAGFQ 65
           RSK V +LN++    VAGF+
Sbjct: 186 RSKLVDFLNDLVAIGVAGFR 205


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 392 VRVHRRPALQHRRAGVPAVRLRSLADP 472
           +R+H  P+L+   AG    R   + DP
Sbjct: 31  LRLHDNPSLREGLAGASTFRCVFVLDP 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,346
Number of Sequences: 438
Number of extensions: 2995
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)