Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_A02
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 2e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 3e-23
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 92 2e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 2e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 50 2e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 33 0.002
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 31 0.061
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 0.19
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 26 1.7
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 3.0
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 4.0
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.3
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 24 7.0
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 7.0
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 24 9.3
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 24 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 175 bits (426), Expect = 2e-45
Identities = 83/95 (87%), Positives = 87/95 (91%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNER
Sbjct: 195 ERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNER 254
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FR PEALFQPS LG+E GI E TYNSIMKCDVDI
Sbjct: 255 FRAPEALFQPSALGLENAGIHEATYNSIMKCDVDI 289
Score = 60.1 bits (139), Expect = 1e-10
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKIL 92
Y+GYALPHAI+RLDLAGRDLTDYLMKIL
Sbjct: 166 YEGYALPHAIMRLDLAGRDLTDYLMKIL 193
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (243), Expect = 3e-23
Identities = 44/94 (46%), Positives = 65/94 (69%)
Frame = +1
Query: 100 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERF 279
+GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+
Sbjct: 196 KGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERY 255
Query: 280 RCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
CPE LFQP +G E G+ E +++I DVDI
Sbjct: 256 ECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDI 289
Score = 35.1 bits (77), Expect = 0.004
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILTR 98
Y+ L H + RLD+AGRD T YL+ +L R
Sbjct: 166 YESVVLNHLVGRLDVAGRDATRYLISLLLR 195
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 92.3 bits (219), Expect = 2e-20
Identities = 41/96 (42%), Positives = 59/96 (61%)
Frame = +1
Query: 94 QERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNE 273
++ G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E
Sbjct: 199 RKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTE 258
Query: 274 RFRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
F PE LF P +G EA G+ + SI+ D+D+
Sbjct: 259 CFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDL 294
Score = 36.3 bits (80), Expect = 0.002
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILTRA 101
YDG+++P AI + ++ GRD+TDYL L ++
Sbjct: 171 YDGFSIPSAIQQEEIGGRDVTDYLQLQLRKS 201
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 49.6 bits (113), Expect = 2e-07
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Frame = +1
Query: 94 QERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNE 273
Q+ S+ +R ++ + KE + V LD + A A+S + K +E PDG G E
Sbjct: 238 QDLTSSYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQE 294
Query: 274 RFRCPEALFQPSFLGMEAC---------GIQETTYNSIMKCDVDI 381
RFR E LF PSF + G+ E Y SI+ CD ++
Sbjct: 295 RFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSEL 339
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 49.6 bits (113), Expect = 2e-07
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 20/98 (20%)
Frame = +1
Query: 127 EREIVRDIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------ 246
E IV +IKE +CYV+ +F+++M S LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 247 GQVITIGNERFRCPEALFQPSFLGMEACGIQETTYNSI 360
QV+ + NERF PE LF PS + + GI E S+
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
Score = 23.8 bits (49), Expect = 9.3
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +3
Query: 33 AILRLDLAGRDLTDYLMKILT 95
A+ R+D+ G+ LT+YL ++++
Sbjct: 182 AVKRVDVGGKLLTNYLKEVIS 202
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 33.1 bits (72), Expect(2) = 0.002
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 202 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 306
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 22.2 bits (45), Expect(2) = 0.002
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 331 GIQETTYNSIMKCDVDI 381
GI + N I +CDVDI
Sbjct: 326 GIPQLFQNCISECDVDI 342
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 31.1 bits (67), Expect = 0.061
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 148 IKEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 315
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 316 GME-ACGIQETTYNSIMKCDVDI 381
+ + E N + +D+
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDV 322
Score = 26.2 bits (55), Expect = 1.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 12 DGYALPHAILRLDLAGRDLTDYLMKIL 92
+GY + +I + LAGRD+T ++ +L
Sbjct: 198 EGYVIGSSIKTMPLAGRDVTYFVQSLL 224
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.19
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 271 ERFRCPEALFQPSFLGMEACGIQE 342
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 26.2 bits (55), Expect = 1.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 378 VNVTLHDGVVCRLLDATSFHTQERGLEESLWATEPFV 268
VN T HDG V L T + Q R +SL + EP V
Sbjct: 610 VNATYHDGTVRYNLFNTYGYDQSRVTYDSLTSIEPNV 646
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 3.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +3
Query: 12 DGYALPHAILRLDLAGRDLTDYLMKILTRA 101
+G +P++ ++++ G D+T MK+L R+
Sbjct: 310 EGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 4.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 265 GNERFRCPEALFQPSFLGME-ACGIQETTYNSIMKCDV 375
G+ R C + F F + ACG +ET S+ +C +
Sbjct: 1654 GSARLSC-KVFFAEQFSALRRACGCEETFVTSLARCSL 1690
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 5.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 148 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 255
IKEKL VA EQE + SSL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 7.0
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +1
Query: 148 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 327
+ EK+ Y L +E + S S + S L + +R +A Q + L
Sbjct: 59 LAEKVLYSHLVNPEESFSGVSPSDIRGSLYLK------LNPDRVAMQDASAQMALLQFMT 112
Query: 328 CGIQETTYNSIMKCD 372
CG+++T + + CD
Sbjct: 113 CGLEKTMIPASIHCD 127
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 163 CYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNE-RFRCP 288
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 23.8 bits (49), Expect = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 228 VLRTPRRSSHHNRKRKVPLPR 290
VL + HNR+R+VP+ R
Sbjct: 12 VLFEAMKQEQHNRRRRVPMER 32
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 23.8 bits (49), Expect = 9.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 139 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 255
+R I++ L + L + +T ASSSS+EK + GQ+
Sbjct: 258 IRCIEKNLKLILLHLAK--STGASSSSVEKIHAYLSGQI 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,707
Number of Sequences: 5004
Number of extensions: 23576
Number of successful extensions: 92
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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