Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_A02
(381 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 192 1e-49
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 192 1e-49
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 192 1e-49
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 192 1e-49
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 192 1e-49
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 192 1e-49
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 191 2e-49
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 191 2e-49
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 191 2e-49
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 191 2e-49
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 178 9e-46
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 99 5e-22
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 85 2e-17
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 51 3e-07
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 46 7e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 46 7e-06
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 43 9e-05
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 29 1.5
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 28 2.6
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 27 3.4
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 27 3.4
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 192 bits (467), Expect = 1e-49
Identities = 89/95 (93%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEALFQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 256 FRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDI 290
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILT 195
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 192 bits (467), Expect = 1e-49
Identities = 89/95 (93%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEALFQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 256 FRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDI 290
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILT 195
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 192 bits (467), Expect = 1e-49
Identities = 89/95 (93%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEALFQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 256 FRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDI 290
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILT 195
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 192 bits (467), Expect = 1e-49
Identities = 89/95 (93%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 152 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 211
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEALFQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 212 FRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDI 246
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 123 YEGYALPHAILRLDLAGRDLTDYLMKILT 151
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 192 bits (467), Expect = 1e-49
Identities = 89/95 (93%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 182 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 241
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEALFQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 242 FRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDI 276
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 153 YEGYALPHAILRLDLAGRDLTDYLMKILT 181
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 192 bits (467), Expect = 1e-49
Identities = 89/95 (93%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEALFQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 256 FRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDI 290
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILT 195
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 191 bits (465), Expect = 2e-49
Identities = 88/95 (92%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEA+FQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 256 FRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDI 290
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILT 195
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 191 bits (465), Expect = 2e-49
Identities = 88/95 (92%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEA+FQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 256 FRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDI 290
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILT 195
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 191 bits (465), Expect = 2e-49
Identities = 88/95 (92%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEA+FQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 256 FRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDI 290
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILT 195
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 191 bits (465), Expect = 2e-49
Identities = 88/95 (92%), Positives = 93/95 (97%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNER
Sbjct: 196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPEA+FQPSFLGME+ GI ET+YNSIMKCD+DI
Sbjct: 256 FRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDI 290
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAILRLDLAGRDLTDYLMKILT
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILT 195
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 178 bits (434), Expect = 9e-46
Identities = 83/95 (87%), Positives = 87/95 (91%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
ERGY+FTTTAEREIVRDIKEKLCYVA DFE E+A AASSSSLEKSYELPDGQVITIGNER
Sbjct: 195 ERGYTFTTTAEREIVRDIKEKLCYVAHDFESELAAAASSSSLEKSYELPDGQVITIGNER 254
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FRCPE LFQP+F+GME GI ETTY SIMKCDVDI
Sbjct: 255 FRCPEVLFQPAFIGMEGAGIHETTYQSIMKCDVDI 289
Score = 59.7 bits (138), Expect = 7e-10
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKILT 95
Y+GYALPHAI RLDLAGRDLTDY+MKILT
Sbjct: 166 YEGYALPHAIQRLDLAGRDLTDYMMKILT 194
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 99 bits (238), Expect = 5e-22
Identities = 44/94 (46%), Positives = 60/94 (63%)
Frame = +1
Query: 97 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 276
+RGY+F +A+ E VR +KEKLCY+A D EQE A ++ L + Y LPDG+VI +G ER
Sbjct: 199 QRGYNFNHSADFETVRQMKEKLCYIAYDVEQEERLALETTVLSQQYTLPDGRVIRLGGER 258
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVD 378
F PE LFQP + +E G+ E + I D+D
Sbjct: 259 FEAPEILFQPHLINVEKAGLSELLFGCIQASDID 292
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKIL 92
Y+G+AL H RLD+AGRD+T YL+K+L
Sbjct: 170 YEGFALHHLTRRLDIAGRDITKYLIKLL 197
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 84.6 bits (200), Expect = 2e-17
Identities = 43/96 (44%), Positives = 56/96 (58%)
Frame = +1
Query: 94 QERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNE 273
+ GY F + E EIVR++KE CY+ALD T ++S++ SY LPD I I N
Sbjct: 198 RREGYEFHRSNEFEIVREMKENACYLALD-----PTKVENNSVKSSYALPDTTKIEISNS 252
Query: 274 RFRCPEALFQPSFLGMEACGIQETTYNSIMKCDVDI 381
FR PE LF+P +G E G+ SIMKCDVD+
Sbjct: 253 LFRAPEVLFKPDLIGTEWPGMAHVVNQSIMKCDVDL 288
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 15 GYALPHAILRLDLAGRDLTDYLMKILTR 98
G+A+ HAI R+DLAGRD+T+YL +L R
Sbjct: 172 GFAMKHAIQRMDLAGRDVTEYLRVLLRR 199
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 50.8 bits (116), Expect = 3e-07
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Frame = +1
Query: 106 YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSS--SLEKSYELPDGQV-ITIGNER 276
Y+F + E+ I+R E+ YV D+++E + + SL+ P Q I N R
Sbjct: 373 YAFQSPVEKLILRFALEQTTYVPEDYQKEEKSENKETRISLDAFTPSPGMQTRFDIDNSR 432
Query: 277 FRCPEALFQPSFLGMEACGIQETTYNSIMKCDVD 378
F C E LF+P G++ G+ + + +I++C +D
Sbjct: 433 FLCTEGLFKPKKWGLDTKGLHQLIHEAILQCPID 466
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 46.4 bits (105), Expect = 7e-06
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Frame = +1
Query: 127 EREIVRDIKEKLCYVALDFEQEMATAAS---SSSLEKSYELPD------GQV-------- 255
E ++ + KE LC+V+ +F++ M A + ++ K Y +PD G V
Sbjct: 198 ETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPDFHSTFRGVVKDVKEPHD 257
Query: 256 -----ITIGNERFRCPEALFQPSFLGMEACGIQETTYNSIMKC 369
I +G ERF PE LF PS + ++ CG+ E SI +C
Sbjct: 258 PQIPSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQC 300
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 46.4 bits (105), Expect = 7e-06
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Frame = +1
Query: 127 EREIVRDIKEKLCYVALDFEQEMATAAS---SSSLEKSYELPD------GQV-------- 255
E ++ + KE LC+V+ +F++ M A + ++ K Y +PD G V
Sbjct: 198 ETYVINECKEDLCFVSQNFDESMKEARNRFQGNTTMKRYIMPDFHSTFRGVVKDVKEPHD 257
Query: 256 -----ITIGNERFRCPEALFQPSFLGMEACGIQETTYNSIMKC 369
I +G ERF PE LF PS + ++ CG+ E SI +C
Sbjct: 258 PQIPSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQC 300
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 42.7 bits (96), Expect = 9e-05
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Frame = +1
Query: 25 YRTPSCVWT*PVATSQTT**RFSQERGYSFTTTAER--EIVRDIKEKLCYVALDFEQEMA 198
Y SC+ P+A T S R T AE+ E+ + IKEK CYV D +E
Sbjct: 191 YVIGSCIKHIPIAGRDITYFIQSLLRDREHTIPAEQSYEVAKMIKEKFCYVCPDVMKEFV 250
Query: 199 T-AASSSSLEKSYELPDGQV-----ITIGNERFRCPEALFQPSFLGME-ACGIQETTYNS 357
++ ++Y+ + + +G ERF PE F P F E I +T
Sbjct: 251 KYDTDAAKWLRTYDGINSITKKPFNVDVGYERFLGPEIFFHPEFCNPEFTTPISDTIDTL 310
Query: 358 IMKCDVDI 381
I +C +D+
Sbjct: 311 IQQCPIDV 318
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 12 DGYALPHAILRLDLAGRDLTDYLMKIL 92
DGY + I + +AGRD+T ++ +L
Sbjct: 189 DGYVIGSCIKHIPIAGRDITYFIQSLL 215
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 9 YDGYALPHAILRLDLAGRDLTDYLMKIL 92
+DGYA+ HA+++ + G +T+ L ++L
Sbjct: 189 FDGYAVTHAVVKCPIGGDLITEQLAQML 216
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 232 YELPDGQVITIGNERFRCPEALFQPSFLGME 324
Y P+G G ER + PE LF +L E
Sbjct: 293 YAFPNGYTKEFGAERIKLPECLFDLGYLKAE 323
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 379 CQRHTS*WSCMSSPGCHKLPYPRTRAGREP 290
CQRH SC G H PY + R P
Sbjct: 425 CQRHAGFESCSCDDGYHLSPYDKKTCLRSP 454
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = -3
Query: 379 CQRHTS*-WSCMSSPGCH 329
C+ H S W C+SSP CH
Sbjct: 317 CEAHGSKIWQCISSPSCH 334
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 381 DVNVTLHDGVVCRLLDATSFHTQERGLEESLWATEPFVSDCDDLTVGE 238
DV+ TLHD V RL D + + RG+ SL+ P C D+ V E
Sbjct: 587 DVHKTLHDIVHMRLGDNKAKSDEGRGI--SLFDAIPNTRTCADVIVPE 632
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,163,476
Number of Sequences: 27780
Number of extensions: 135956
Number of successful extensions: 492
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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