Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_A02
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             135   2e-34
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   4.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   4.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  135 bits (326), Expect = 2e-34
 Identities = 63/64 (98%), Positives = 63/64 (98%)
 Frame = +1

Query: 190 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIQETTYNSIMKC 369
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI ETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 370 DVDI 381
           DVDI
Sbjct: 61  DVDI 64


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +3

Query: 204 CLQQLPREVLRTPRRSSHHNRKRKVPLPRGSLPALVLGYG 323
           C++  P   +   RR  H      +P+P+ +   ++  YG
Sbjct: 32  CVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMINQYG 71


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 335 MPQASIPKNEGWKRASGQRNLSFPIVMT 252
           + Q  IP +      +G+RN+  PIV +
Sbjct: 165 LKQVKIPHDIAINSTTGKRNVVTPIVQS 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,845
Number of Sequences: 438
Number of extensions: 1770
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)