Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P24
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   1.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   5.4  

>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -2

Query: 521 KINVIYY--KHYYVLTIYLFGLLYIRIYSVLK*IYKQASKYKNMENTK 384
           +++V+ Y  +HY    + +   L IRI  + K I +Q + YK+++NT+
Sbjct: 52  RLHVMDYEDRHYVETLLCMLEQLTIRIEFLTKEIAQQEAAYKDIQNTQ 99


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 469  LVYCTLEFIVFLSKFINKRQNIKTW 395
            L+YC    ++ +S FIN+   ++ W
Sbjct: 1996 LLYCASFLLIGISSFINENMYLRLW 2020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,948
Number of Sequences: 5004
Number of extensions: 45045
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)