Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P24
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112     30   1.3  
01_06_1653 + 38922265-38923086                                         27   7.2  
01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375           27   7.2  
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795...    27   9.5  

>01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112
          Length = 200

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 289 GNVYFNGIIILFRTHFQRNSVNIHYFITILIYFVFSMFL 405
           G + F+G+I + +T+F    V   + +  L Y VF++FL
Sbjct: 159 GGISFDGMICVSKTNFTSMVVMSGFGVLFLAYLVFNLFL 197


>01_06_1653 + 38922265-38923086
          Length = 273

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 518 INVIYYKHYYVLTIYLFGLLYIRIYSVL 435
           + V YY HY ++ + L GLL +  Y V+
Sbjct: 89  LGVEYYLHYTLVLVVLSGLLVLGFYHVM 116


>01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375
          Length = 241

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +1

Query: 103 TLYVYDCEIEINFNDIFELKFLWNVIYYRMETKSFNCLLGIFSYHTYVYINT*HKIKE 276
           T+ V    + ++F    ++KF W   Y ++   S  CL+G+ +Y  + +    H + E
Sbjct: 175 TITVMTSLVALSFYGASQIKFHWVERYDKILVGSVLCLVGVLTYVFHHHDGDEHSLHE 232


>03_02_0381 +
           7951360-7951509,7952125-7952169,7952625-7952744,
           7952823-7952930,7953256-7953363,7953635-7953808,
           7954054-7954191,7954643-7954750,7954866-7954973,
           7955086-7955234,7955816-7955969,7956143-7956303,
           7956391-7956597,7956703-7956886,7956974-7957057,
           7957146-7957345,7957476-7957535,7957631-7957835
          Length = 820

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 307 GIII-LFRTHFQRNSVNIHYFITILIYFVFSMFLY 408
           GI+I  F   F RNSVN+ Y     + F+ S+F Y
Sbjct: 559 GIVISYFNAKFFRNSVNVWYQFIPQLIFLNSLFGY 593


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,980,771
Number of Sequences: 37544
Number of extensions: 195963
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)