Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P24
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025354-1|AAH25354.1|  248|Homo sapiens CKLF-like MARVEL transm...    30   5.9  
AY862139-1|AAW51946.1|  195|Homo sapiens chemokine-like factor s...    30   5.9  
AK098598-1|BAC05345.1|  248|Homo sapiens protein ( Homo sapiens ...    30   5.9  
AF479260-1|AAN73038.1|  248|Homo sapiens chemokine-like factor s...    30   5.9  

>BC025354-1|AAH25354.1|  248|Homo sapiens CKLF-like MARVEL
           transmembrane domain containing 2 protein.
          Length = 248

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 340 RNSVNIHYFITILIYFVFSMFLYFDACL 423
           R S+N+HY + +++     +F + D CL
Sbjct: 171 RRSMNLHYLLAVILIGAAGVFAFIDVCL 198


>AY862139-1|AAW51946.1|  195|Homo sapiens chemokine-like factor
           super family 2 transcript variant 2 protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 340 RNSVNIHYFITILIYFVFSMFLYFDACL 423
           R S+N+HY + +++     +F + D CL
Sbjct: 118 RRSMNLHYLLAVILIGAAGVFAFIDVCL 145


>AK098598-1|BAC05345.1|  248|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25732 fis, clone TST05645. ).
          Length = 248

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 340 RNSVNIHYFITILIYFVFSMFLYFDACL 423
           R S+N+HY + +++     +F + D CL
Sbjct: 171 RQSMNLHYLLAVILIGAAGVFAFIDVCL 198


>AF479260-1|AAN73038.1|  248|Homo sapiens chemokine-like factor
           super family 2 protein.
          Length = 248

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 340 RNSVNIHYFITILIYFVFSMFLYFDACL 423
           R S+N+HY + +++     +F + D CL
Sbjct: 171 RRSMNLHYLLAVILIGAAGVFAFIDVCL 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,800,246
Number of Sequences: 237096
Number of extensions: 1208139
Number of successful extensions: 1936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1931
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)