Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P24
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.4  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 284 LRISLILCHVFIYTYVW 234
           L I++++C  F Y++ W
Sbjct: 14  LTITIVMCQTFTYSHGW 30


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 208 NCLLGIFSYHTYVYINT*HKIKEIRKKGNVYFNG 309
           N      S H   Y+NT   +K   +  NV++ G
Sbjct: 262 NLYYSALSSHNLNYVNTEQFVKSQYQANNVHYQG 295


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 64  NINRFFASNIG*ITLYVYDCEIEINFND 147
           NI RFF S     T+Y  D EI  + ND
Sbjct: 550 NIERFFKSKPPVATMYGSDEEIINSSND 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,716
Number of Sequences: 438
Number of extensions: 3033
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)