Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P23
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 346 1e-96
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 345 4e-96
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 172 4e-44
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 112 4e-26
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 29 0.38
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.88
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.5
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 4.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 4.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 6.2
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.2
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 346 bits (851), Expect = 1e-96
Identities = 152/194 (78%), Positives = 176/194 (90%)
Frame = +2
Query: 8 ERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICR 187
ERL+++YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICR
Sbjct: 159 ERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICR 218
Query: 188 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 367
RNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P
Sbjct: 219 RNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSP 278
Query: 368 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAT 547
++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +
Sbjct: 279 IVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTS 338
Query: 548 IKTKRTIQFVDWCP 589
IK++RTIQFVDWCP
Sbjct: 339 IKSRRTIQFVDWCP 352
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 345 bits (847), Expect = 4e-96
Identities = 152/194 (78%), Positives = 175/194 (90%)
Frame = +2
Query: 8 ERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICR 187
ERL+++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICR
Sbjct: 155 ERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICR 214
Query: 188 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 367
RNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP
Sbjct: 215 RNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAP 274
Query: 368 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAT 547
++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ T
Sbjct: 275 IVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTT 334
Query: 548 IKTKRTIQFVDWCP 589
IK KRTIQFVDWCP
Sbjct: 335 IKAKRTIQFVDWCP 348
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 172 bits (418), Expect = 4e-44
Identities = 76/193 (39%), Positives = 120/193 (62%)
Frame = +2
Query: 11 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 190
++ +Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I
Sbjct: 154 KIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFAN 213
Query: 191 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 370
L I+ P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+
Sbjct: 214 TLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPL 273
Query: 371 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 550
+ + + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I ++
Sbjct: 274 AAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSV 333
Query: 551 KTKRTIQFVDWCP 589
+TK + FV+W P
Sbjct: 334 QTKNSAYFVEWIP 346
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 112 bits (269), Expect = 4e-26
Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 5/199 (2%)
Frame = +2
Query: 8 ERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 184
ERL+ Y KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I
Sbjct: 155 ERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIA 214
Query: 185 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYA 364
L + PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y
Sbjct: 215 ADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYT 274
Query: 365 PVIS---AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVN 532
P + E + +V ++ P NQMV +P + +++ + +G+ P DV+
Sbjct: 275 PFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVH 334
Query: 533 AAIATIKTKRTIQFVDWCP 589
++ I+ +R F+ W P
Sbjct: 335 KSLLRIRERRYASFIPWGP 353
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 29.5 bits (63), Expect = 0.38
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 141 IVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYH 254
++ S+ T KP + TW +N R P S+ + H
Sbjct: 37 VIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGH 74
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 416 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 541
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 295 DIEGAVETQRGGNR*YDLADKTIEVGVGRAFN 200
DIE E GN+ ++L +K I++ G+ FN
Sbjct: 58 DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +3
Query: 153 WSTMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI*RSSRPTWC 326
W T KP + A W ++ + + + S +PP S A + + RP WC
Sbjct: 428 WRTHKPLILRATPQWFISLENERKTAIKALDSVKMIPP--NSRARLLGF-LNGRPEWC 482
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 198 ILNARPTPTSIVLSARSYHRL 260
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 547 GSDSRVDVLGHDVTAVQHAAGHVFAVT 467
G+D + GH V +Q A G VF+ T
Sbjct: 421 GADEKPKYAGHVVAVLQRAPGQVFSGT 447
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 8.2
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 1/127 (0%)
Frame = +2
Query: 86 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 265
V E +I + L SD +NE YDI +N + E N I + + +
Sbjct: 47 VEEVVEAINGSPDLLSESDVENAKNNEHTYDIDNKNFNFEPKNSVNKTETIREELDQAAS 106
Query: 266 SLRFDGALNVDLTE-FQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 442
+ + L++ E F+ +V T A + A+ H + + E+ E A
Sbjct: 107 KILIE-TLDLHQKEGFEETIVTEE------ATDAVDLEAKGTTHGENDLDEVPTELNELA 159
Query: 443 NQMVKCD 463
N++V D
Sbjct: 160 NEVVDVD 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,127
Number of Sequences: 5004
Number of extensions: 50570
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -