Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P22
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   1.5  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.4  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    26   4.5  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   7.9  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.9  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 321 HGHTRHVDKAAERGTRRGLEDRSHRTHSHQQEMDGG 428
           H H++  D+  E+  ++   DR HR H   +E D G
Sbjct: 726 HSHSKSHDREKEKEKKK---DREHRKHRETEEEDEG 758


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 229 RAITIAEDVSGMPASCRPVKEGGTGFDY 312
           R+ T+AE+ S MP SC P     T  ++
Sbjct: 411 RSETLAENPSNMPGSCLPGASSNTADEF 438


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 294 RYGVRLPARHGHTRHVDKAAERGTRRGLEDRSHRTHSHQQE 416
           R  +R      H R +D  A+RG + G    + RT +HQ E
Sbjct: 213 RAELRYNRSKSHFRDLDNIAKRGNQLGKLAMTLRTLAHQHE 253


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 118 IGEGFSGHYDEYYGLNVDTEALVYLML 198
           I E  S H     G NVDTE L +L++
Sbjct: 190 IAESPSSHSTSPMGRNVDTETLSFLLI 216


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 10  EVLRFLLSNLRWYQEEYQFDGFRFDGVTSMLY 105
           +V  +L  + +    +Y FDG R D V  M Y
Sbjct: 205 DVSSYLSDHFKSLISKYDFDGLRIDAVKMMNY 236


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  GFRFDGVTSMLYHSRGIGEGFSGHYDEYYGLNVDTEALVYLMLANEITHNI 222
           G ++DG+    +H R   + FS      Y   + +  L+Y     E+ H +
Sbjct: 55  GGKYDGIKYFDHHQREFNDTFS----PKYSTRLSSAGLIYKHFGREVIHAV 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,242
Number of Sequences: 5004
Number of extensions: 50245
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)