Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P22
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 264 3e-71
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 259 1e-69
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927... 139 1e-33
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039... 31 0.49
02_03_0197 - 16249988-16250509 29 2.6
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565... 28 4.6
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 28 4.6
01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575... 28 4.6
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 28 6.1
07_01_0832 - 6761239-6761675,6761878-6761920 27 8.0
05_07_0020 + 27097140-27097676,27097857-27098036,27099361-270994... 27 8.0
04_04_1422 + 33453498-33453519,33453617-33454887 27 8.0
04_03_0811 - 19909128-19912214 27 8.0
04_01_0391 + 5143157-5143596,5144826-5145139,5145359-5145426 27 8.0
>02_04_0064 - 19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 264 bits (648), Expect = 3e-71
Identities = 119/188 (63%), Positives = 143/188 (76%)
Frame = +1
Query: 10 EVLRFLLSNLRWYQEEYQFDGFRFDGVTSMLYHSRGIGEGFSGHYDEYYGLNVDTEALVY 189
EVLRFLLSN RW+ EEY+FDGFRFDGVTSM+Y G+ F+G+Y EY+G D +A+VY
Sbjct: 449 EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDADAVVY 508
Query: 190 LMLANEITHNIDGRAITIAEDVSGMPASCRPVKEGGTGFDYRLGMAIPDMWIKLLKEERD 369
LML N++ H + AITI EDVSGMP PV++GG GFDYRL MA+PD WI+LLK+ D
Sbjct: 509 LMLVNDLIHGLYPEAITIGEDVSGMPTFALPVQDGGVGFDYRLHMAVPDKWIELLKQS-D 567
Query: 370 EDWKIGHIVHTLTNRRWMEGTIAYAESHDQALVGDKTIAFWLMDATMYSHMSTISEPSPV 549
E WK+G IVHTLTNRRW E + YAESHDQALVGDKTIAFWLMD MY M+ +P
Sbjct: 568 ESWKMGDIVHTLTNRRWSEKCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPATPS 627
Query: 550 VERGLALH 573
++RG+ALH
Sbjct: 628 IDRGIALH 635
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 259 bits (634), Expect = 1e-69
Identities = 117/190 (61%), Positives = 142/190 (74%)
Frame = +1
Query: 1 ARGEVLRFLLSNLRWYQEEYQFDGFRFDGVTSMLYHSRGIGEGFSGHYDEYYGLNVDTEA 180
A EVLRFLLSNLR++ +E+ FDGFRFDGVTSMLYH GI +GF+G+Y EY+ L+ D +A
Sbjct: 317 ANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDA 376
Query: 181 LVYLMLANEITHNIDGRAITIAEDVSGMPASCRPVKEGGTGFDYRLGMAIPDMWIKLLKE 360
+VY+MLAN + H + A +AEDVSGMP CRPV EGG GFD+RL MAIPD WI LK
Sbjct: 377 IVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWIDYLKN 436
Query: 361 ERDEDWKIGHIVHTLTNRRWMEGTIAYAESHDQALVGDKTIAFWLMDATMYSHMSTISEP 540
+ D W + IV TLTNRR+ E IAYAESHDQ++VGDKTIAF LMD MY+ MS +
Sbjct: 437 KEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPA 496
Query: 541 SPVVERGLAL 570
SP + RG+AL
Sbjct: 497 SPTINRGIAL 506
>06_02_0365 +
15190841-15190988,15191296-15191754,15192692-15192782,
15192902-15193003,15193126-15193228,15193548-15193685,
15193912-15193974,15195042-15195124,15196312-15196411,
15196640-15196717,15196834-15196941,15197987-15198067,
15200179-15200220,15200221-15200283,15200426-15200482
Length = 571
Score = 139 bits (337), Expect = 1e-33
Identities = 65/160 (40%), Positives = 96/160 (60%)
Frame = +1
Query: 10 EVLRFLLSNLRWYQEEYQFDGFRFDGVTSMLYHSRGIGEGFSGHYDEYYGLNVDTEALVY 189
+VL FLLSNL W+ EY+ DGF+F + SMLY G F+G +EYY VD +AL+Y
Sbjct: 222 DVLHFLLSNLNWWVTEYRVDGFQFHSLPSMLYTHNGFST-FTGATEEYYNQYVDEDALIY 280
Query: 190 LMLANEITHNIDGRAITIAEDVSGMPASCRPVKEGGTGFDYRLGMAIPDMWIKLLKEERD 369
L++ANE+ H + ITIAED + P C P +GG GFDY + ++IP+MW+ L+ +
Sbjct: 281 LIIANEMLHELHPDIITIAEDATFYPGLCEPTTQGGLGFDYWVNLSIPEMWLWHLENVPE 340
Query: 370 EDWKIGHIVHTLTNRRWMEGTIAYAESHDQALVGDKTIAF 489
++W + I+ L N ++Y E+H+Q + AF
Sbjct: 341 QEWSMNKIMRVLVNNN--SNMLSYVENHNQFFAFGQFFAF 378
>09_04_0463 -
17803120-17803233,17803647-17803758,17803866-17803927,
17804171-17804269,17804370-17804474,17804560-17804639,
17806445-17806517,17806611-17806700,17807215-17807277,
17808104-17808155,17808504-17808604,17809139-17809238,
17809683-17809746,17810127-17810184,17810549-17810635,
17810736-17810870,17810950-17811054,17811247-17811351,
17811427-17811663,17812287-17812380,17812863-17813020,
17813289-17813363,17813448-17813512,17814206-17814260
Length = 762
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 13 VLRFLLSNLRWYQEEYQFDGFRFD 84
V +L +LR + EEY DGFRFD
Sbjct: 402 VKELILDSLRHWVEEYHIDGFRFD 425
>02_03_0197 - 16249988-16250509
Length = 173
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 246 RGRIR-NAGVM-SARERGRYGVRLPARHGHTRHVDKAAERGTRRGLEDRSHRTHS 404
R R+R + G M +RE G G LP R G A T G E RSHR H+
Sbjct: 73 RSRLRLHIGEMRGSREGGGSGQLLPPRRGREAAATAAV---TMPGRESRSHRQHN 124
>08_02_0396 -
16654603-16655030,16655803-16655906,16655988-16656579,
16656820-16656993,16657105-16657309
Length = 500
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 211 THNIDGRAITIAEDVSGMPASCRPVKEGGTGFDYRLGMAIPDMWIKLLKEERDEDWKIGH 390
TH D +IAE+V P C T L A + L ++E D + K GH
Sbjct: 90 THGDDAPVESIAEEVLEEPVQCLETVIENTQEQPELEDAAYCFYCFLFRQEADHE-KFGH 148
Query: 391 IVHTLT 408
+V + T
Sbjct: 149 VVFSKT 154
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 560 PRSTTGLGSLIVLM*LYIVASINQNAIV--LSPTKAWSWLSAYAMVPSIHLLLVRVCT 393
P T G ++V + V +I + ++ + P W WL A + VPS LLL V T
Sbjct: 180 PAPTRGTW-MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVIT 236
>01_07_0201 +
41956938-41957022,41957123-41957214,41957460-41957561,
41957691-41957763,41958297-41958403,41958476-41958599,
41959004-41959198,41959515-41959600,41959695-41959802,
41960171-41960266,41960347-41960445,41960562-41960636,
41961040-41961171,41961252-41961367,41961935-41962109
Length = 554
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 276 SARERGRYGVRLPARHGHTRHVDKAAERGTRRGLEDRSHRTHSHQQEMDGGNH 434
+A+ G++G+ + H +D A G + G+E ++S + +DGG H
Sbjct: 400 AAKRFGKHGIIASVQPDHI--LDDANSAGKKIGIERAERSSYSFRSLLDGGAH 450
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 470 PTKAWSWLSAYAMVPSIHLLLVRVCTM 390
P+ W WL A++ +PS LLL T+
Sbjct: 119 PSLGWRWLLAFSSLPSFALLLFYPLTL 145
>07_01_0832 - 6761239-6761675,6761878-6761920
Length = 159
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 348 LYPHVGYGHA*PVIEPRTALFHGPT*RRHS*YVLGNSNGSAVY 220
L P VG G A + ALF GP +S Y L + G++VY
Sbjct: 100 LIPRVGSGGAYEIATSLEALFEGPI---YSLYSLSSYGGASVY 139
>05_07_0020 +
27097140-27097676,27097857-27098036,27099361-27099456,
27099557-27099706,27099794-27099925
Length = 364
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 267 GVMSARERGRYGVRLPARHGHTRHVDKAAERGTRRGLEDRSHR 395
G+ A E + ARH H H A G RRG +R HR
Sbjct: 137 GIPFAAEASSVDCVVVARHHHAHHTAAAMGSG-RRGEAERRHR 178
>04_04_1422 + 33453498-33453519,33453617-33454887
Length = 430
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 319 GMAIPDMWIKLLKEERDEDWKIGHIVHTLTNRRWMEGTIAYAESHD 456
G A P++W+ L E+ + + G ++ + RR A AES +
Sbjct: 265 GYAAPELWMALPATEKCDVYSFGMVLFEVLGRRRNYDLAAQAESQE 310
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 340 WIKLLKEERDEDWKIGHIVHTLTNRRWMEGTIAYAESH 453
WIKL+ E+ ED K +TN+ GT A SH
Sbjct: 292 WIKLVCEQTTEDQKWHISGKCITNKEVSSGTTALLLSH 329
>04_01_0391 + 5143157-5143596,5144826-5145139,5145359-5145426
Length = 273
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 154 YGLNVDTEALVYLMLANEITHNIDGRAITIAEDVSGMPA 270
+ +++ +A + L L + +T DGRA+T E V+ +PA
Sbjct: 35 FTVSMTLKAAIQLGLIDALTAAADGRALTAGELVAQLPA 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,442,640
Number of Sequences: 37544
Number of extensions: 403224
Number of successful extensions: 1030
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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