Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P21
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    66   4e-12
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   1.6  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    27   1.6  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   2.8  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   4.9  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   8.6  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
 Frame = +1

Query: 10  DHQTSMVMIRDILMYMDRVYVQQNEVDNVYNLGLIIFRDQVVRYGC-IRDHLRQTLLELI 186
           DH  SM MI  +L Y+D+VY +  +   V   G+ IFR+ V+     I +   +T+L L+
Sbjct: 131 DHIVSMQMISSVLKYLDKVYSKSADKVPVNENGIYIFREVVLLNSFEIGEKCVETILILV 190

Query: 187 ARERRGEVVDRLAIRNACQMLMVLGINSR--AVYEEDFEKPFLHQSSEFYSMESQKFLGE 360
             ER+G  ++R  I +   ML  L   ++   +Y+  F   FL  +  FY +ES   +G 
Sbjct: 191 YLERKGNTINRPLINDCLDMLNSLPSENKKETLYDVLFAPKFLSYTRNFYEIESSTVIGV 250

Query: 361 NSAAVYINRVEARITQ 408
                Y+ + E R  +
Sbjct: 251 FGVVEYLKKAEKRFEE 266



 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 407 KEAERARHYLDESTEPRIVAVLEHELIERHM 499
           +E ER+++YL       +++V+E EL+ +H+
Sbjct: 266 EEKERSKNYLFTKIASPLLSVVEDELLSKHL 296


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 224 RSVTLAR--C*WCSALTHALYTKRTLKNLFYINRPSFTAWSLKS 349
           RSV   R  C  CS+L   LY+K   K+  Y+ R S  A  +KS
Sbjct: 593 RSVETGRAICCICSSLHKFLYSKSIRKDELYVERVSRFALMVKS 636


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 233 LRIASRSTTSPLRSRAINSNKVWRRWSRIQP*RTT 129
           +R+ S S TSP+  +A+++N    R   I+P R T
Sbjct: 14  VRLKSTSATSPITYKALHANSPLPRCRIIEPPRAT 48


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 400 CEPPRGLYTPRRCS 359
           CE P G +TPRRC+
Sbjct: 2   CETPIGCHTPRRCN 15


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 172 LLELIARERRGEVV-DRLAIRNACQMLMVLGINSRAVYEEDFEKPFLHQSSEFYSMESQK 348
           LL+L++R    ++  D L +R+    L    I   + YE+   KPF H  + F  +E+  
Sbjct: 44  LLDLVSRSDNKDLYQDSLDVRDNFSNLSSDEIPQSSSYEQT-RKPFFHHFNPFEFLEATS 102

Query: 349 FLGEN 363
            L +N
Sbjct: 103 PLQQN 107


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 299 NLFYINRPSFTAWSLKSFSVRTAP 370
           N  YIN PS + W +  F++ + P
Sbjct: 302 NHMYINIPSLSYWQIHPFTIASVP 325


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 308 YINRPSFTAWSLKSFSVRTAP 370
           YIN PS + W +  F++ +AP
Sbjct: 298 YINIPSLSYWQVHPFTLASAP 318


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 124 DQVVRYGCIRDHLR-QTLLELIARE-RRGEVV 213
           D+++RYGC R  +  Q++ E +AR+  RG  V
Sbjct: 230 DEMLRYGCTRLEIGVQSVYEDVARDTNRGHTV 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,864
Number of Sequences: 5004
Number of extensions: 41658
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)