Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P21
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 129 1e-30
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 129 1e-30
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 50 1e-06
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 38 0.003
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 38 0.003
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 36 0.017
AF099919-3|AAC68801.2| 862|Caenorhabditis elegans Hypothetical ... 28 4.5
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 129 bits (311), Expect = 1e-30
Identities = 64/130 (49%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Frame = +1
Query: 10 DHQTSMVMIRDILMYMDRVYV-QQNEVDNVYNLGLIIFRDQVVRYGCIRDHLRQTLLELI 186
DH +MVMIRDILMYMDR+YV Q N V VYNLGL +R +++R I D +R LLELI
Sbjct: 108 DHTVAMVMIRDILMYMDRIYVAQNNHVLPVYNLGLDAYRTEILRQNGIGDRIRDALLELI 167
Query: 187 ARERRGEVVDRLAIRNACQMLMVLGINSRAVYEEDFEKPFLHQSSEFYSMESQKFL-GEN 363
+R+ ++ I+NAC ML+ LGI+SR VYE++FE+P L ++S++Y + +L G+N
Sbjct: 168 KLDRKSNQINWHGIKNACDMLISLGIDSRTVYEDEFERPLLKETSDYYRDVCKNWLSGDN 227
Query: 364 SAAVYINRVE 393
A Y+ +VE
Sbjct: 228 DACFYLAQVE 237
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 129 bits (311), Expect = 1e-30
Identities = 64/130 (49%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Frame = +1
Query: 10 DHQTSMVMIRDILMYMDRVYV-QQNEVDNVYNLGLIIFRDQVVRYGCIRDHLRQTLLELI 186
DH +MVMIRDILMYMDR+YV Q N V VYNLGL +R +++R I D +R LLELI
Sbjct: 108 DHTVAMVMIRDILMYMDRIYVAQNNHVLPVYNLGLDAYRTEILRQNGIGDRIRDALLELI 167
Query: 187 ARERRGEVVDRLAIRNACQMLMVLGINSRAVYEEDFEKPFLHQSSEFYSMESQKFL-GEN 363
+R+ ++ I+NAC ML+ LGI+SR VYE++FE+P L ++S++Y + +L G+N
Sbjct: 168 KLDRKSNQINWHGIKNACDMLISLGIDSRTVYEDEFERPLLKETSDYYRDVCKNWLSGDN 227
Query: 364 SAAVYINRVE 393
A Y+ +VE
Sbjct: 228 DACFYLAQVE 237
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 50.0 bits (114), Expect = 1e-06
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Frame = +1
Query: 94 VYNLGLIIFRDQVVRYGCIRDHLRQTLLELIARERRGEVVDRLAIRNACQMLMVLGINSR 273
VY L L++++ + + ++D + +LELI ER G +++ I + L+ LG++
Sbjct: 155 VYTLALVVWKRNL--FNDLKDKVIDAMLELIRSERTGSMINSRYISGVVECLVELGVDDS 212
Query: 274 -------------AVYEEDFEKPFLHQSSEFYSMESQKFLGE-NSAAVYINRVEARITQ 408
AVY+E FE FL + FY+ E+ FL + Y+ +VE R+ Q
Sbjct: 213 ETDAKKDAETKKLAVYKEFFEVKFLEATRGFYTQEAANFLSNGGNVTDYMIKVETRLNQ 271
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 50.0 bits (114), Expect = 1e-06
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Frame = +1
Query: 94 VYNLGLIIFRDQVVRYGCIRDHLRQTLLELIARERRGEVVDRLAIRNACQMLMVLGINSR 273
VY L L++++ + + ++D + +LELI ER G +++ I + L+ LG++
Sbjct: 155 VYTLALVVWKRNL--FNDLKDKVIDAMLELIRSERTGSMINSRYISGVVECLVELGVDDS 212
Query: 274 -------------AVYEEDFEKPFLHQSSEFYSMESQKFLGE-NSAAVYINRVEARITQ 408
AVY+E FE FL + FY+ E+ FL + Y+ +VE R+ Q
Sbjct: 213 ETDAKKDAETKKLAVYKEFFEVKFLEATRGFYTQEAANFLSNGGNVTDYMIKVETRLNQ 271
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 265 NSRAVYEEDFEKPFLHQSSEFYSMESQKFLGENSAAVYINRVEARITQ 408
++ A Y+E FEKP L + ++YS +QK L + S + Y+ +V + Q
Sbjct: 214 STTAFYQESFEKPLLTDTEQYYSALAQKMLTDLSCSEYMEQVIVLLEQ 261
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 265 NSRAVYEEDFEKPFLHQSSEFYSMESQKFLGENSAAVYINRVEARITQ 408
++ A Y+E FEKP L + ++YS +QK L + S + Y+ +V + Q
Sbjct: 231 STTAFYQESFEKPLLTDTEQYYSALAQKMLTDLSCSEYMEQVIVLLEQ 278
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 265 NSRAVYEEDFEKPFLHQSSEFYSMESQKFLGENSAAVYINRVEARITQ 408
++ A Y+E FEKP L + ++YS +QK L + S + Y+ +V + Q
Sbjct: 214 STTAFYQESFEKPLLTDTEQYYSALAQKMLTDLSCSEYMEQVIVLLEQ 261
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 265 NSRAVYEEDFEKPFLHQSSEFYSMESQKFLGENSAAVYINRVEARITQ 408
++ A Y+E FEKP L + ++YS +QK L + S + Y+ +V + Q
Sbjct: 290 STTAFYQESFEKPLLTDTEQYYSALAQKMLTDLSCSEYMEQVIVLLEQ 337
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 265 NSRAVYEEDFEKPFLHQSSEFYSMESQKFLGENSAAVYINRVEARITQ 408
++ A Y+E FEKP L + ++YS +QK L + S + Y+ +V + Q
Sbjct: 214 STTAFYQESFEKPLLTDTEQYYSALAQKMLTDLSCSEYMEQVIVLLEQ 261
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical
protein ZK856.1 protein.
Length = 765
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 148 IRDHLRQTLLELIARERRGEVVDRLAIRNACQMLMVL----GINSRAVYEEDFEKPFLHQ 315
I + L L L+ ER G ++D + + + L G + VY + FE+ F+ Q
Sbjct: 135 ISEQLLVEALRLVKEERDGNIIDAQNVIGIRESFVALNDRAGEDPLLVYRQSFERQFIEQ 194
Query: 316 SSEFYSMESQKFLGENSAAVYINRVEARITQ 408
++E+Y L E Y+ + ++ +
Sbjct: 195 TTEYYKKICGNLLNELGVLEYMVYADKKLEE 225
>AF099919-3|AAC68801.2| 862|Caenorhabditis elegans Hypothetical
protein F40G9.9 protein.
Length = 862
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 363 VLTEKLLRLHAVKLGRLM*KRFFKVL 286
V EK+ +LH VKL L+ KR FK L
Sbjct: 274 VFDEKMKKLHLVKLPVLVQKRIFKFL 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,682,520
Number of Sequences: 27780
Number of extensions: 241546
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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