Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P20
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-18|CAO82066.1|  134|Caenorhabditis elegans Hypothetical p...    95   2e-20
Z66521-17|CAI46628.1|  103|Caenorhabditis elegans Hypothetical p...    95   2e-20
AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like ...    95   2e-20
Z34802-9|CAB54281.3|  160|Caenorhabditis elegans Hypothetical pr...    36   0.016
L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical pr...    30   1.1  
L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical p...    27   5.7  
AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.     27   5.7  
Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.      27   10.0 
U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein...    27   10.0 
U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein...    27   10.0 

>Z66521-18|CAO82066.1|  134|Caenorhabditis elegans Hypothetical
           protein W02B12.15b protein.
          Length = 134

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 36/63 (57%), Positives = 48/63 (76%)
 Frame = +2

Query: 269 SGQINPIIRKDIKKVVDFIDIEDITEKAVLCRCWRSKNWPYCDGAHGPHNRQTGDNTGPV 448
           S + N  I+ D  K+VD +DIEDI EK   CRCW+S+ WPYCDG+HG HN++TGDN GP+
Sbjct: 68  SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127

Query: 449 VVR 457
           +V+
Sbjct: 128 IVK 130


>Z66521-17|CAI46628.1|  103|Caenorhabditis elegans Hypothetical
           protein W02B12.15a protein.
          Length = 103

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 36/63 (57%), Positives = 48/63 (76%)
 Frame = +2

Query: 269 SGQINPIIRKDIKKVVDFIDIEDITEKAVLCRCWRSKNWPYCDGAHGPHNRQTGDNTGPV 448
           S + N  I+ D  K+VD +DIEDI EK   CRCW+S+ WPYCDG+HG HN++TGDN GP+
Sbjct: 37  SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 96

Query: 449 VVR 457
           +V+
Sbjct: 97  IVK 99


>AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 605

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 36/63 (57%), Positives = 48/63 (76%)
 Frame = +2

Query: 269 SGQINPIIRKDIKKVVDFIDIEDITEKAVLCRCWRSKNWPYCDGAHGPHNRQTGDNTGPV 448
           S + N  I+ D  K+VD +DIEDI EK   CRCW+S+ WPYCDG+HG HN++TGDN GP+
Sbjct: 68  SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127

Query: 449 VVR 457
           +V+
Sbjct: 128 IVK 130


>Z34802-9|CAB54281.3|  160|Caenorhabditis elegans Hypothetical
           protein M88.7 protein.
          Length = 160

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 272 GQINPIIRKDIK-KVVDFIDIEDITEKAVLCRCWRSKNWPYCDGAH 406
           G  N I   D+K K V FI  +D+T    LC C ++ N P+CDG+H
Sbjct: 103 GSHNSIRIPDLKLKPVRFIPDKDMT--VWLCNCKQTNNRPFCDGSH 146


>L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical
           protein C02F5.7a protein.
          Length = 461

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 230 YSYQTIKKARISGSGQINPIIRKDIK-KVVDFIDIEDITEKAVLCRCW 370
           Y   T+  A++  S  IN ++ K++  KV  F+D + +   A +CR W
Sbjct: 41  YLITTLSPAQVDNS-LINRVLPKEVLLKVFSFLDTKALCRSAQVCRSW 87


>L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical
           protein C02F5.7b protein.
          Length = 466

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 230 YSYQTIKKARISGSGQINPIIRKDIK-KVVDFIDIEDITEKAVLCRCW 370
           Y   T+  A++  S  IN ++ K++  KV  F+D + +   A +CR W
Sbjct: 41  YLITTLSPAQVDNS-LINRVLPKEVLLKVFSFLDTKALCRSAQVCRSW 87


>Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical
           protein T20G5.6 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 119 YLAGLPIPDSIGGWFRLGVKDWLALV 196
           ++ GLPI   +GGW+ +G    +A V
Sbjct: 106 FIVGLPIAVKVGGWWSIGAMVGVAYV 131


>AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 119 YLAGLPIPDSIGGWFRLGVKDWLALV 196
           ++ GLPI   +GGW+ +G    +A V
Sbjct: 106 FIVGLPIAVKVGGWWSIGAMVGVAYV 131


>Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical
           protein ZK678.1 protein.
          Length = 719

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 225 EIPPTTTVGGTRASQSFTPSRNQPPIESGIGRPAK*LGMVTFTKF 91
           E+ PT         +S +P   +PP ++ + +PA  LG +  T F
Sbjct: 599 ELVPTLLQNKPTHVESSSPVEKKPPTKTNVEKPAVRLGRMLTTAF 643


>Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.
          Length = 722

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 225 EIPPTTTVGGTRASQSFTPSRNQPPIESGIGRPAK*LGMVTFTKF 91
           E+ PT         +S +P   +PP ++ + +PA  LG +  T F
Sbjct: 599 ELVPTLLQNKPTHVESSSPVEKKPPTKTNVEKPAVRLGRMLTTAF 643


>U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 225 EIPPTTTVGGTRASQSFTPSRNQPPIESGIGRPAK*LGMVTFTKF 91
           E+ PT         +S +P   +PP ++ + +PA  LG +  T F
Sbjct: 599 ELVPTLLQNKPTHVESSSPVEKKPPTKTNVEKPAVRLGRMLTTAF 643


>U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 225 EIPPTTTVGGTRASQSFTPSRNQPPIESGIGRPAK*LGMVTFTKF 91
           E+ PT         +S +P   +PP ++ + +PA  LG +  T F
Sbjct: 599 ELVPTLLQNKPTHVESSSPVEKKPPTKTNVEKPAVRLGRMLTTAF 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,966
Number of Sequences: 27780
Number of extensions: 218448
Number of successful extensions: 678
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)