Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P20
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/40 (20%), Positives = 16/40 (40%)
 Frame = -3

Query: 494 C*ACLSYLQPVCA*RRQARYCLRSVYCGVREHRHNKANFC 375
           C  C  + +     + Q R C ++  C +     N+  +C
Sbjct: 84  CEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYC 123


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 319 IYHLLNILPDYWIYLTTTRNSCFLDGLVR 233
           ++H L  LP  + +LT    + F  G+++
Sbjct: 324 LFHALITLPTIFWFLTRQNPAAFFRGMMQ 352


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 217  THNNSGGNQSQPIFYSKSK 161
            THN +G NQ++  F + +K
Sbjct: 1574 THNVAGSNQAEFTFVTLTK 1592


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 217  THNNSGGNQSQPIFYSKSK 161
            THN +G NQ++  F + +K
Sbjct: 1570 THNVAGSNQAEFTFVTLTK 1588


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 225  EIPPTTTVGGTRASQSFTPSRNQPPIESGIG 133
            E PP  T   T  SQ+   S   PP+ +  G
Sbjct: 1082 EQPPHDTTCTTLTSQTIRISWMSPPLSAANG 1112


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 102 KLPFLIIWLVYQYLT 146
           K PFLI W + Q +T
Sbjct: 209 KTPFLISWGIAQVVT 223


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 102 KLPFLIIWLVYQYLT 146
           K PFLI W + Q +T
Sbjct: 209 KTPFLISWGIAQVVT 223


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 199 GNQSQPIFYSKSKPASN 149
           GNQ    FYS S P  N
Sbjct: 15  GNQLNRSFYSASYPPQN 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,260
Number of Sequences: 438
Number of extensions: 2841
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)