Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P19
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    77   1e-15
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    28   0.88 
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   4.7  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   4.7  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   6.2  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.2  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   8.2  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 1/175 (0%)
 Frame = +1

Query: 58  MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXX 237
           M+LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I       
Sbjct: 1   MSLSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMK 60

Query: 238 XXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLI 417
                    I  SN+LN++RL++L  ++  + ++     K+L  + +    Y+  +  LI
Sbjct: 61  LKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLI 120

Query: 418 VQALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIKK-DTQLKVDTESFLS 579
           VQA+  L EP   +  RQ D   V++ + +A +  K+K    D +L  +T+ FL+
Sbjct: 121 VQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLN 175


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 574 GSSRCLPSTVCPS*SLSCNPVEL*QGSTLLVTCPLDGR 461
           G    L S +CP  SLS  P+ L    TL +  PLD R
Sbjct: 423 GIPAILISAICPH-SLSFRPIILPDSMTLRIVVPLDAR 459


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 198 ATAAEDHGILREKRKTGGTPEKNSIIKHAEP 290
           A  + D+G+  +  KTG +P K S +   EP
Sbjct: 3   AHGSNDYGVSLKGNKTGSSPSKASSLNWNEP 33


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 207 PLLLHEAAFFNVELLLGLSIDFFSLFIGLLFDEGHHMLDLLLNICIAER 61
           P L+H     N E L  L ++FF  F G LFD  H +L +     +++R
Sbjct: 262 PDLVHGFGDKNEESLGILFVEFFRFF-GYLFDYEHFVLSIRHGTFLSKR 309


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 399 SSYNTHCTGSIPVNGAIGDHPRPSSGQVTSRVDPC*SSTGL 521
           SS +T  T ++P+NGA   +P  +S  +    DP   + G+
Sbjct: 62  SSPSTTGTVAVPINGANAVYPSTNSVSLPQSYDPWLDANGV 102


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 322 DHVRNVLDEARKRLAEVPKD 381
           D   N L+EA+KRLA +P D
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD 200


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 280 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 387
           M +QARL+ L K+R+    +  ++ +K LAE+ +D K
Sbjct: 92  MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 56  PWRSAMQMFKSRSSI*WPSSNKRPMKRLKKSMLRPRRS 169
           P  SAM  F    S+ +   N+R +K++K+++L P RS
Sbjct: 72  PRNSAMGNFMV--SVDFQDRNQRSLKQVKRTVLLPHRS 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,853
Number of Sequences: 5004
Number of extensions: 35429
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)