Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P19
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 103 1e-22
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 95 3e-20
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 86 2e-17
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270... 29 2.1
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340... 27 8.4
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 27 8.4
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 103 bits (247), Expect = 1e-22
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 64 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 243
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 244 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQ 423
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y +LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 424 ALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIK-KDTQLKVDTESFLSP 582
L +L EP+V +R R+ D VES+L A+ +Y +K + ++ VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPP 174
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 95.5 bits (227), Expect = 3e-20
Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Frame = +1
Query: 64 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 243
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 244 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIV- 420
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y +L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 421 ----------QALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIKKD-TQLKVDTE 567
Q+L +L EPSV +R R+ D+ VES+L A+++Y K K + ++ +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180
Query: 568 SFLSP 582
+L P
Sbjct: 181 VYLPP 185
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 86.2 bits (204), Expect = 2e-17
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 11/184 (5%)
Frame = +1
Query: 64 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 243
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 244 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQ 423
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y +LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 424 ----------ALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIK-KDTQLKVDTES 570
+L +L EP+V +R R+ D+ VES+L A+ +Y K ++ VD
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181
Query: 571 FLSP 582
+L P
Sbjct: 182 YLPP 185
>02_03_0179 +
16025962-16026143,16026570-16026684,16026852-16027065,
16027346-16027397,16027411-16027696
Length = 282
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 62 RSAMQMFKSRSSI*WPSSNKRPMKRLKKSMLRPRRSSTLKKAASCSNS 205
R A ++ +SRSS P R +++ +R R +S+L + A+C N+
Sbjct: 54 RGARRVSRSRSSAAHPRGRLHAACRPRRAGIRVRSTSSLPQVATCKNN 101
>04_01_0256 +
3402982-3402984,3403077-3403158,3403307-3403449,
3403557-3403832,3404136-3404315
Length = 227
Score = 27.5 bits (58), Expect = 8.4
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Frame = +1
Query: 289 QARLKVLKVREDHVRNVLDEARKRLAEV------PKDTKLYSDLLTTLIVQALFQ-LMEP 447
Q +LKV E V+NVL + K E P+ + L ++ T+ V L++ L +
Sbjct: 6 QVKLKVRGASETEVKNVLRQEFKESIEYRNYSKNPESSSLKVEVRGTVDVGKLYERLKKM 65
Query: 448 SVTIRVRQVDKSQVESILARAQQDYK--TKIKKDTQLKV 558
+ ++++ V V+ + R ++D + + K+D +K+
Sbjct: 66 ASSVKIESVIPDDVKEEIERYKKDLERMKRQKEDLDIKL 104
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 586 CPETGSSRCLPSTVCPS*SLSCNPVEL*QGSTLLVTCPLD 467
C G + C P TVCP S SC + + LL ++
Sbjct: 618 CCCEGQAFCTPGTVCPPNSKSCGSESIKEPPALLTKIAME 657
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,376,141
Number of Sequences: 37544
Number of extensions: 249190
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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