Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P18
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0389 + 18434838-18434907,18435007-18435335                       29   1.4  
02_02_0254 + 8350897-8351110,8351152-8351294                           28   2.5  
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746...    28   3.3  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    27   4.4  
08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058           27   5.8  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    27   7.7  

>02_03_0389 + 18434838-18434907,18435007-18435335
          Length = 132

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 26  RAAGIRHEDKPESAGDTANLYSCNQNQIHVHLHSSADKYNVDP 154
           RA G   E KPE A + AN   C Q+++ +  +  +   +VDP
Sbjct: 43  RATGRVVEGKPEYAVEVANRCRCAQSRVVLRCYGLSSVESVDP 85


>02_02_0254 + 8350897-8351110,8351152-8351294
          Length = 118

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 267 SLVSHV*TRPLPSPGPCNSAVIDMAPSISLILISLGKHGSTLYLSAELCRCT 112
           SL+ ++ T P+ S   CN+ V  + P +S+   +  +HG       E C C+
Sbjct: 3   SLLCNIWTDPISSTEKCNNGVKLLEPELSIAATNRKRHGKR--ERVEDCNCS 52


>04_01_0576 +
           7466032-7466802,7468382-7468444,7469043-7469122,
           7469505-7469622,7470035-7470067,7470400-7470474,
           7470887-7471043,7471142-7471230,7472041-7472294,
           7472977-7473148,7473250-7473333,7473626-7473730,
           7474055-7474363,7474622-7474756,7476236-7476317,
           7476423-7476502,7476622-7476783,7477071-7477138,
           7478422-7478502,7478634-7478760,7478816-7478879,
           7480808-7480854,7481042-7481335
          Length = 1149

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -2

Query: 240 PLPSPGPCNSAVIDMAPSISLILISLGKHGS-TLYLSAELCRCTWIWFWLHEYKLAVSPA 64
           P P P PC+ +  D AP ++ +    G+     L+ SAE    +       +   A  PA
Sbjct: 66  PPPPPHPCDVSRADFAPYLAAVADPFGRFADIRLHASAEELAES-------QDGAAAGPA 118

Query: 63  DSGLSSC--RIPA 31
            SGL++C   +PA
Sbjct: 119 ASGLAACLREVPA 131


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  KLVDPGLQEFGTRINPNPQVILPICTHVTKTKS 110
           KL   G QEF T +N NP   +P C    K KS
Sbjct: 531 KLTKEG-QEFVTPVNCNPDCNIPSCLAPNKAKS 562


>08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058
          Length = 484

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 23  SRAAGIRHEDKPESAGDTANLYSCNQNQIHVHLHSSADKYN 145
           + A+ ++ +DK  S  D  +L  CN +   V     AD+Y+
Sbjct: 269 ANASAVQSDDKRGSKSDQDDLEGCNDDDCTVAYDEIADEYS 309


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 285  SPCFTSSLVSHV*TRPLPSPGPCNSAVIDMAPS 187
            +P    S+V    TRPL SP   ++ V+D+ P+
Sbjct: 2655 TPHMHGSIVDEKKTRPLASPTKSSNDVLDLTPA 2687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,648,625
Number of Sequences: 37544
Number of extensions: 274527
Number of successful extensions: 765
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)