Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P18
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ... 31 0.33
Z95559-14|CAJ76976.1| 338|Caenorhabditis elegans Hypothetical p... 27 5.3
Z95559-12|CAJ43917.1| 396|Caenorhabditis elegans Hypothetical p... 27 5.3
Z95559-11|CAB09005.2| 435|Caenorhabditis elegans Hypothetical p... 27 5.3
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 26 9.2
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 26 9.2
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 26 9.2
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 26 9.2
AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein. 26 9.2
>AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ion
channel protein 30 protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 56 PESAGDTANLYSCNQNQIHVHLHSSADKYNVDPCLPSEIKISDIDGAISITAELQGP 226
P+S + YS N N + LHS+ D+ +P EI ++++ + L+GP
Sbjct: 405 PKSFRYDKDAYSRNNNVQAISLHSTPDRNVAKNLIPKEINFTEVNQDAPLHDVLEGP 461
>Z95559-14|CAJ76976.1| 338|Caenorhabditis elegans Hypothetical
protein Y41E3.7c protein.
Length = 338
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 95 NQNQIHVHLHSSADKYNVDPCLPSEIKISDIDGAISITAELQGPGD-GSGLVQT 253
+ NQ+ VH+ S D+ + D L E + ++ G A GPGD +G +QT
Sbjct: 225 DSNQVSVHVSESDDEEDYDEAL--EAEQAEAGGGGGGAAGQGGPGDVEAGAMQT 276
>Z95559-12|CAJ43917.1| 396|Caenorhabditis elegans Hypothetical
protein Y41E3.7b protein.
Length = 396
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 95 NQNQIHVHLHSSADKYNVDPCLPSEIKISDIDGAISITAELQGPGD-GSGLVQT 253
+ NQ+ VH+ S D+ + D L E + ++ G A GPGD +G +QT
Sbjct: 283 DSNQVSVHVSESDDEEDYDEAL--EAEQAEAGGGGGGAAGQGGPGDVEAGAMQT 334
>Z95559-11|CAB09005.2| 435|Caenorhabditis elegans Hypothetical
protein Y41E3.7a protein.
Length = 435
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 95 NQNQIHVHLHSSADKYNVDPCLPSEIKISDIDGAISITAELQGPGD-GSGLVQT 253
+ NQ+ VH+ S D+ + D L E + ++ G A GPGD +G +QT
Sbjct: 322 DSNQVSVHVSESDDEEDYDEAL--EAEQAEAGGGGGGAAGQGGPGDVEAGAMQT 373
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +1
Query: 175 NKRYRWSHIDN---GRITGPRRWKRSRSDM 255
N + W I + GRITG W+R R ++
Sbjct: 393 NHKIGWEKIGDDLGGRITGSEEWRRERGEL 422
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 187 RWSHIDNGRITGPRRWKRSRSD 252
R+ + NGR TGP R K R D
Sbjct: 151 RYKTLSNGRYTGPAREKAVRDD 172
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
protein B0207.5 protein.
Length = 3279
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 309 CGDPIDNSLHFDKNIPLYIL*YNNYCEF 392
CG+P+D +L KNI + +L + Y E+
Sbjct: 715 CGNPVDTTLPNCKNIDVEVLSNSEYEEY 742
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
C37C3.6b protein.
Length = 2167
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 27 GLQEFGTRINPNPQVILPICTHVTKTKSMYTCTVQRTNIM 146
GL +FG+RI L I +T +YTC + + M
Sbjct: 2021 GLLQFGSRITEENDDTLEIVDALTADAGVYTCIAGQDSTM 2060
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +1
Query: 175 NKRYRWSHIDN---GRITGPRRWKRSRSDM 255
N + W I + GRITG W+R R ++
Sbjct: 393 NHKIGWEKIGDDLGGRITGSEEWRRERGEL 422
>AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein.
Length = 542
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +1
Query: 175 NKRYRWSHIDN---GRITGPRRWKRSRSDM 255
N + W I + GRITG W+R R ++
Sbjct: 329 NHKIGWEKIGDDLGGRITGSEEWRRERGEL 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,697,032
Number of Sequences: 27780
Number of extensions: 228990
Number of successful extensions: 659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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